Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G416400.1 | Wheat | cytosol | 98.26 | 96.92 |
| TraesCS3A01G420900.1 | Wheat | cytosol | 95.83 | 95.17 |
| Os01t0915000-01 | Rice | cytosol | 78.12 | 76.79 |
| Zm00001d012069_P001 | Maize | mitochondrion | 75.0 | 75.0 |
| Zm00001d042376_P001 | Maize | cytosol | 75.69 | 74.15 |
| EES04096 | Sorghum | cytosol | 75.69 | 73.65 |
| HORVU3Hr1G093260.1 | Barley | plastid | 85.76 | 60.99 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 37.85 | 52.4 |
| TraesCS4B01G187500.1 | Wheat | mitochondrion | 39.93 | 38.46 |
| Bra040373.1-P | Field mustard | plastid | 23.61 | 35.42 |
| VIT_00s0337g00040.t01 | Wine grape | cytosol | 32.64 | 33.33 |
| AT3G07350.1 | Thale cress | nucleus | 34.03 | 32.89 |
| Solyc06g007580.1.1 | Tomato | nucleus | 33.33 | 32.11 |
| CDY35924 | Canola | nucleus | 33.33 | 32.0 |
| KRH46613 | Soybean | mitochondrion, nucleus | 31.6 | 31.93 |
| AT3G25240.1 | Thale cress | cytosol | 30.9 | 31.67 |
| Bra029641.1-P | Field mustard | nucleus | 32.64 | 31.33 |
| CDY28060 | Canola | cytosol, nucleus, plastid | 32.64 | 31.33 |
| PGSC0003DMT400053173 | Potato | nucleus | 32.29 | 31.1 |
| CDY60822 | Canola | nucleus | 32.29 | 31.1 |
| CDY52283 | Canola | nucleus | 29.86 | 30.5 |
| CDY34904 | Canola | nucleus | 31.94 | 30.46 |
| Bra013223.1-P | Field mustard | nucleus | 29.51 | 30.14 |
| CDY15101 | Canola | nucleus | 28.82 | 29.86 |
| Solyc06g083160.1.1 | Tomato | nucleus | 30.21 | 29.69 |
| KRH07392 | Soybean | nucleus | 30.56 | 29.43 |
| PGSC0003DMT400051812 | Potato | nucleus | 29.17 | 28.28 |
| TraesCS4B01G278500.1 | Wheat | peroxisome, plastid | 29.51 | 27.33 |
| TraesCS1B01G352000.1 | Wheat | nucleus | 27.08 | 27.27 |
| PGSC0003DMT400008686 | Potato | cytosol | 24.31 | 25.55 |
| TraesCS3B01G442800.1 | Wheat | cytosol | 21.18 | 25.42 |
| TraesCS5B01G442200.1 | Wheat | plastid | 31.6 | 24.27 |
| Solyc09g057760.2.1 | Tomato | nucleus | 17.36 | 23.15 |
| TraesCS3B01G307800.1 | Wheat | nucleus | 22.22 | 22.94 |
| TraesCS3B01G600900.1 | Wheat | plastid | 25.35 | 20.92 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G456400.1 | EnsemblPlantsGene:TraesCS3B01G456400 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF9 | PFAM:PF04720 |
| SEG:seg | TIGRFAMs:TIGR01615 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr3B:-:697910197..697911063
Molecular Weight (calculated)
29924.3 Da
IEP (calculated)
8.860
GRAVY (calculated)
-0.149
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVYIRLDDA VRARLRGDGG GTSSGSDHDA SACLSDLVQA FLETDAAGNG DDAAGPAPKG RDGYDSDDAD GAAEAAASVR ELLDPPAAED PFRIRLAAAV
101: SAALDAEAPL RGHGAAFRRA VMRRLRAAGY DAGVCRSRWE TCGNLTAGTY EYIDVVVPAA GKAARYIVDA DFRAGLEVAR ATAEYAVVVA AVPAKAVVSR
201: EEAVGRAVRV AADAARRSLR AHGLHVPPWR KSRYMLAKWL GPYKRSPSSS SSASGAMPAP GGPGMDIIKC RAVGFFPSQT AAPAARIK
101: SAALDAEAPL RGHGAAFRRA VMRRLRAAGY DAGVCRSRWE TCGNLTAGTY EYIDVVVPAA GKAARYIVDA DFRAGLEVAR ATAEYAVVVA AVPAKAVVSR
201: EEAVGRAVRV AADAARRSLR AHGLHVPPWR KSRYMLAKWL GPYKRSPSSS SSASGAMPAP GGPGMDIIKC RAVGFFPSQT AAPAARIK
001: MGFSRAKRVT DPLAEEVRAR LVGCSFSSGS EHTGDGIEDY EDDDSPCLSD LVQGFLEDEV DTVDDESCWC DQDSGSDSDS DSELGELPDF ADDIAKLLRN
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
Arabidopsis Description
F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.