Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400063189 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07350.1 | PGSC0003DMT400063189 | AT3G48150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g007580.1.1 | Tomato | nucleus | 93.65 | 93.65 |
| PGSC0003DMT400051812 | Potato | nucleus | 65.22 | 65.66 |
| PGSC0003DMT400008686 | Potato | cytosol | 52.17 | 56.93 |
| VIT_00s0337g00040.t01 | Wine grape | cytosol | 50.84 | 53.9 |
| Bra040373.1-P | Field mustard | plastid | 34.45 | 53.65 |
| Bra029641.1-P | Field mustard | nucleus | 47.16 | 47.0 |
| CDY35924 | Canola | nucleus | 46.82 | 46.67 |
| CDY15101 | Canola | nucleus | 43.14 | 46.4 |
| AT3G25240.1 | Thale cress | cytosol | 43.48 | 46.26 |
| AT3G07350.1 | Thale cress | nucleus | 45.82 | 45.97 |
| CDY52283 | Canola | nucleus | 43.14 | 45.74 |
| CDY28060 | Canola | cytosol, nucleus, plastid | 45.82 | 45.67 |
| CDY60822 | Canola | nucleus | 45.48 | 45.48 |
| Bra013223.1-P | Field mustard | nucleus | 42.47 | 45.04 |
| CDY34904 | Canola | nucleus | 45.48 | 45.03 |
| KRH07392 | Soybean | nucleus | 43.14 | 43.14 |
| KRH46613 | Soybean | mitochondrion, nucleus | 40.47 | 42.46 |
| GSMUA_Achr6P21070_001 | Banana | cytosol | 36.45 | 36.58 |
| PGSC0003DMT400079089 | Potato | cytosol | 18.06 | 35.53 |
| Os01t0915000-01 | Rice | cytosol | 32.78 | 33.45 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 22.74 | 32.69 |
| Os11t0437600-01 | Rice | plastid | 33.11 | 32.35 |
| Zm00001d042376_P001 | Maize | cytosol | 31.77 | 32.31 |
| TraesCS3B01G456400.1 | Wheat | cytosol | 31.1 | 32.29 |
| TraesCS4D01G188800.1 | Wheat | mitochondrion | 32.11 | 32.11 |
| TraesCS3D01G416400.1 | Wheat | cytosol | 31.1 | 31.85 |
| EES04096 | Sorghum | cytosol | 31.44 | 31.76 |
| HORVU4Hr1G054810.1 | Barley | mitochondrion | 31.1 | 31.74 |
| TraesCS3A01G420900.1 | Wheat | cytosol | 30.77 | 31.72 |
| Zm00001d012069_P001 | Maize | mitochondrion | 30.43 | 31.6 |
| TraesCS4B01G187500.1 | Wheat | mitochondrion | 30.77 | 30.77 |
| TraesCS4A01G116900.1 | Wheat | plastid | 31.44 | 28.83 |
| HORVU3Hr1G093260.1 | Barley | plastid | 32.11 | 23.7 |
| PGSC0003DMT400076442 | Potato | nucleus | 23.08 | 22.85 |
| PGSC0003DMT400041951 | Potato | cytosol | 28.09 | 22.7 |
| PGSC0003DMT400047228 | Potato | nucleus | 21.07 | 22.18 |
| PGSC0003DMT400045914 | Potato | cytosol, extracellular, nucleus | 19.4 | 20.71 |
| PGSC0003DMT400015576 | Potato | cytosol, plastid | 27.42 | 20.71 |
| PGSC0003DMT400033381 | Potato | cytosol, mitochondrion, nucleus | 21.07 | 20.59 |
| PGSC0003DMT400025041 | Potato | cytosol | 21.4 | 20.51 |
| PGSC0003DMT400049773 | Potato | nucleus | 24.08 | 16.59 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400053173 | EnsemblPlantsGene:PGSC0003DMG400020638 | EntrezGene:102584365 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF4 |
| PFAM:PF04720 | PGSC:PGSC0003DMG400020638 | RefSeq:XP_006344092.1 | SEG:seg | TIGRFAMs:TIGR01615 | UniParc:UPI0002955BC3 |
| UniProt:M1BUI9 | MapMan:35.2 | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400020638]
Coordinates
chr6:-:2670474..2671825
Molecular Weight (calculated)
33620.7 Da
IEP (calculated)
7.884
GRAVY (calculated)
-0.420
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGNGRLKRV TDPLNDKVKA RIVGADLREL GYVSSGSEHS ADADSDVVSP SFSGLVFGFS DDLDQNQSSE NDNSDTELDE SSVDNVPEMI FQSDTDLFRN
101: VLCSHVFKAL EVYSCMKSSK SVLRRNVMMC LRDFGYNAAV CKAKWESSGG LTAGNYEFID VVRLDAVNSQ TRYFIDLDFA AEFEIARPTN FYERLSQLLP
201: KVFVGKSEEL KQILRTMSDA ARRSLKSREL HLPPWRKHRF MQNKWLGPYK RTSNITPSTN TPALFLPPSN QAYTVKCRSV GFETAVHGGL WLPAVTRTR
101: VLCSHVFKAL EVYSCMKSSK SVLRRNVMMC LRDFGYNAAV CKAKWESSGG LTAGNYEFID VVRLDAVNSQ TRYFIDLDFA AEFEIARPTN FYERLSQLLP
201: KVFVGKSEEL KQILRTMSDA ARRSLKSREL HLPPWRKHRF MQNKWLGPYK RTSNITPSTN TPALFLPPSN QAYTVKCRSV GFETAVHGGL WLPAVTRTR
001: MGFSRAKRVT DPLAEEVRAR LVGCSFSSGS EHTGDGIEDY EDDDSPCLSD LVQGFLEDEV DTVDDESCWC DQDSGSDSDS DSELGELPDF ADDIAKLLRN
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
Arabidopsis Description
F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.