Factsheet for PGSC0003DMT400033381

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g006410.2.1	Tomato	cytosol	93.14	93.75
PGSC0003DMT400076442	Potato	nucleus	65.36	66.23
VIT_00s0265g00090.t01	Wine grape	mitochondrion	52.29	51.78
KRH10888	Soybean	mitochondrion	50.0	51.0
KRH21430	Soybean	mitochondrion, nucleus	49.35	50.0
KRH20449	Soybean	mitochondrion	50.65	47.11
KRH50053	Soybean	mitochondrion	48.37	45.96
GSMUA_Achr7P24960_001	Banana	cytosol	40.2	44.89
PGSC0003DMT400047228	Potato	nucleus	41.5	44.72
GSMUA_Achr4P02600_001	Banana	nucleus	39.87	43.88
GSMUA_Achr3P31780_001	Banana	cytosol	40.85	43.55
TraesCS3B01G307800.1	Wheat	nucleus	36.93	40.5
Zm00001d043444_P001	Maize	nucleus	36.93	39.79
EES01469	Sorghum	nucleus	36.6	39.72
HORVU3Hr1G071220.1	Barley	nucleus	33.99	39.69
TraesCS3A01G274100.1	Wheat	nucleus	34.97	38.35
TraesCS3D01G273300.1	Wheat	nucleus	34.64	38.27
EES19824	Sorghum	cytosol	34.97	35.55
HORVU1Hr1G076120.1	Barley	nucleus	32.35	35.23
Os05t0519300-01	Rice	cytosol	34.97	34.97
TraesCS1D01G341700.1	Wheat	cytosol	32.03	33.79
TraesCS1B01G352000.1	Wheat	nucleus	31.37	33.57
TraesCS1A01G339700.1	Wheat	cytosol	31.7	33.33
PGSC0003DMT400079089	Potato	cytosol	16.34	32.89
PGSC0003DMT400045914	Potato	cytosol, extracellular, nucleus	22.55	24.64
PGSC0003DMT400008686	Potato	cytosol	21.57	24.09
PGSC0003DMT400051812	Potato	nucleus	20.91	21.55
PGSC0003DMT400053173	Potato	nucleus	20.59	21.07
PGSC0003DMT400041951	Potato	cytosol	25.16	20.81
PGSC0003DMT400025041	Potato	cytosol	20.59	20.19
PGSC0003DMT400015576	Potato	cytosol, plastid	25.16	19.44
PGSC0003DMT400049773	Potato	nucleus	24.18	17.05

Protein Annotations

EnsemblPlants:PGSC0003DMT400033381	EnsemblPlantsGene:PGSC0003DMG400012824	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF2	PFAM:PF04720
PGSC:PGSC0003DMG400012824	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI0002960C81	UniProt:M1AZ22	MapMan:35.2

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400012824]

Coordinates

chr3:+:1903094..1905681

Molecular Weight (calculated)

35053.9 Da

IEP (calculated)

6.012

GRAVY (calculated)

-0.549

Length

306 amino acids

Sequence
(BLAST)

001: MARRTMSHRI LTCDKSEIVT FSGDPASINI SDTIFGFLNN ESLKSIHLDF CDENENEDDD DEGEEKDESE NVEDNQFWET QHQLLQGVLY RTTSLESQIR
101: SITKEAIKEG NGIICSCRRT PDDGCKTCLM KEVCNRLQIA GFNSAICKSK WKNSPDIPSG EHTFIDVIDS SNPKKGEVRV IIELNFRSEF EMARGCEEYN
201: RLVKNLPEIF IGKIERLLSL IKILCAAAKK CMKDKKMHIG PWRKQKYMQA KWLKTRERVE AAKLTYSSSM DEYSSRPPPR PRASMLTVDL LENFPSLHLI
301: TTVEVV

Best Arabidopsis Sequence Match ( AT4G32480.1 )
(BLAST)

001: MDRQSSDDIM KFLDGMASSD DVLFGFLDEG NHSPEDYNFA AGDESEVDND TTDCNSEENR KFWQEHEQLL QATLYRTSSI ETKIRQATKE ALKVVRSKGL
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV

Arabidopsis Description

AT4g32480/F8B4_180 [Source:UniProtKB/TrEMBL;Acc:Q9SUU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.