Factsheet for PGSC0003DMT400015576

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400058821

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22970.1	PGSC0003DMT400058821	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g082980.2.1	Tomato	nucleus	96.46	95.98
PGSC0003DMT400041951	Potato	cytosol	66.67	71.35
VIT_05s0020g04500.t01	Wine grape	nucleus	60.35	61.92
KRH34359	Soybean	plastid	60.35	61.76
KRG92439	Soybean	plastid	59.34	59.8
Bra001897.1-P	Field mustard	cytosol	47.98	57.06
CDX92970	Canola	cytosol	47.98	57.06
Bra036877.1-P	Field mustard	cytosol, plastid	50.51	56.5
CDY29750	Canola	nucleus, plastid	50.51	56.5
AT3G22970.1	Thale cress	plastid	52.78	56.49
CDX94877	Canola	cytosol	49.24	56.2
CDY16266	Canola	nucleus	50.25	55.74
Bra033896.1-P	Field mustard	cytosol	50.51	54.5
CDY10330	Canola	cytosol	49.75	53.83
KRH69065	Soybean	cytosol	49.49	53.55
GSMUA_Achr3P15230_001	Banana	cytosol	45.45	53.41
AT4G14620.1	Thale cress	cytosol	45.96	53.37
KRH31637	Soybean	cytosol	50.76	52.48
GSMUA_Achr8P20590_001	Banana	plastid	46.97	51.24
GSMUA_Achr8P26930_001	Banana	cytosol	45.45	50.99
CDY10329	Canola	plastid	47.47	49.74
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	44.95	49.58
GSMUA_Achr8P04470_001	Banana	cytosol	45.96	49.46
GSMUA_Achr4P14880_001	Banana	mitochondrion	31.82	47.73
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	44.7	46.34
Zm00001d032955_P001	Maize	cytosol, mitochondrion, nucleus, plastid	34.09	45.0
EER91615	Sorghum	mitochondrion	32.58	44.03
PGSC0003DMT400049773	Potato	nucleus	46.97	42.86
TraesCS4B01G278500.1	Wheat	peroxisome, plastid	33.59	42.77
TraesCS4D01G277000.1	Wheat	peroxisome, plastid	33.59	42.77
Os03t0162500-01	Rice	plastid	33.08	42.67
TraesCS5B01G442200.1	Wheat	plastid	40.4	42.67
HORVU4Hr1G073730.1	Barley	peroxisome, plastid	33.84	42.54
EER95459	Sorghum	plastid	31.82	42.14
TraesCS5A01G439200.1	Wheat	plastid	39.9	42.13
GSMUA_Achr9P25590_001	Banana	plastid	43.18	42.01
TraesCS4A01G025500.1	Wheat	peroxisome, plastid	33.33	41.9
Os10t0417800-01	Rice	plastid	31.57	41.53
TraesCS5D01G446400.1	Wheat	plastid	39.9	41.47
Zm00001d027763_P001	Maize	plastid	31.31	41.33
PGSC0003DMT400079089	Potato	cytosol	15.66	40.79
Zm00001d018962_P001	Maize	mitochondrion, plastid	37.63	38.9
HORVU5Hr1G105950.2	Barley	plastid	39.9	38.82
Zm00001d034444_P002	Maize	plastid	39.39	38.52
EER93295	Sorghum	plastid	38.13	38.42
Os03t0796600-01	Rice	cytosol, nucleus, plastid	38.38	37.53
Zm00001d007820_P002	Maize	plastid	36.87	36.41
EER98072	Sorghum	cytosol, plastid	36.87	30.8
PGSC0003DMT400008686	Potato	cytosol	19.95	28.83
PGSC0003DMT400053173	Potato	nucleus	20.71	27.42
PGSC0003DMT400051812	Potato	nucleus	20.2	26.94
PGSC0003DMT400033381	Potato	cytosol, mitochondrion, nucleus	19.44	25.16
PGSC0003DMT400025041	Potato	cytosol	19.44	24.68
PGSC0003DMT400076442	Potato	nucleus	18.43	24.17
PGSC0003DMT400047228	Potato	nucleus	15.66	21.83
PGSC0003DMT400045914	Potato	cytosol, extracellular, nucleus	15.4	21.79

Protein Annotations

EnsemblPlants:PGSC0003DMT400015576	EnsemblPlantsGene:PGSC0003DMG400006081	EntrezGene:102581927	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF19
PFAM:PF04720	PGSC:PGSC0003DMG400006081	RefSeq:XP_006362156.1	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI000295BC0D
UniProt:M1A680	MapMan:35.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400006081]

Coordinates

chr9:+:55016137..55018443

Molecular Weight (calculated)

43790.9 Da

IEP (calculated)

5.651

GRAVY (calculated)

-0.502

Length

396 amino acids

Sequence
(BLAST)

001: MPPTKIQPID SPTDRESIQS DTTKPVVKSR LKRFFDRPFP SVLRISSATE KPNAAGASNE LANGKDGAVP EFEPSSVCLA KMVQNFIEEN NEKPSPAKCG
101: RNRCNCFNGT NNDSSDDEFD FADSAHSSFS DSADALKSLI PCATVVERNL LADISQIVEK NKACKSKNDL RKIVTDELLK LGYNASICKS KWEKAPSVPP
201: GEYEYIDVIE EGERVLIDVD FRSEFEVARS TSSYKAVLQL LPFIFVGNSD RLLQIVSIAS EAARQSLKKK GMHIAPWRKA EYIKAKWLSP HIRTAEATVK
301: SEVKEKLAEE VESKQLSDSE FGELELIFGG QSSYDSNSCT LLSSPPPPVK FSGSEEEKPV QPVMMTWEPP ALKPKNCERG NKVIVPGLAS LLREKP

Best Arabidopsis Sequence Match ( AT3G22970.1 )
(BLAST)

001: MPFTMKIQPI DIDSSPTVAR AESGNKPVLK SRLKRLFDRP FTNVLRNSTT TTTEKPFVVT GGEVQCGGVV TEFEPSSVCL AKMVQNFIEE NNEKQAKCGR
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP

Arabidopsis Description

At3g22970 [Source:UniProtKB/TrEMBL;Acc:Q9LIJ8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.