Factsheet for PGSC0003DMT400049773

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g065760.2.1	Tomato	cytosol, plastid	93.55	93.33
CDX93300	Canola	cytosol	37.1	53.67
VIT_00s0179g00360.t01	Wine grape	cytosol	48.39	52.9
Bra017099.1-P	Field mustard	cytosol	36.18	52.33
CDY18366	Canola	cytosol	36.18	52.33
KRH71351	Soybean	cytosol	42.86	51.81
KRH32089	Soybean	cytosol	39.86	51.03
AT2G38820.2	Thale cress	cytosol	36.18	50.65
KRG95606	Soybean	cytosol	41.71	50.14
GSMUA_Achr3P15230_001	Banana	cytosol	38.25	49.26
CDY14428	Canola	cytosol	35.25	49.2
Bra000098.1-P	Field mustard	cytosol	35.02	49.19
CDY07696	Canola	cytosol	35.25	49.04
PGSC0003DMT400041951	Potato	cytosol	41.71	48.92
PGSC0003DMT400015576	Potato	cytosol, plastid	42.86	46.97
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	38.25	46.24
GSMUA_Achr8P26930_001	Banana	cytosol	36.87	45.33
AT3G54550.1	Thale cress	plastid	29.72	44.79
PGSC0003DMT400079089	Potato	cytosol	15.67	44.74
GSMUA_Achr8P20590_001	Banana	plastid	37.1	44.35
GSMUA_Achr8P04470_001	Banana	cytosol	37.1	43.75
GSMUA_Achr4P14880_001	Banana	mitochondrion	26.5	43.56
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	37.33	42.41
EER91615	Sorghum	mitochondrion	27.19	40.27
Os10t0417800-01	Rice	plastid	27.65	39.87
Os03t0162500-01	Rice	plastid	28.11	39.74
EER95459	Sorghum	plastid	27.19	39.46
Zm00001d032955_P001	Maize	cytosol, mitochondrion, nucleus, plastid	27.19	39.33
TraesCS4B01G278500.1	Wheat	peroxisome, plastid	28.11	39.23
TraesCS4D01G277000.1	Wheat	peroxisome, plastid	28.11	39.23
TraesCS4A01G025500.1	Wheat	peroxisome, plastid	28.34	39.05
GSMUA_Achr9P25590_001	Banana	plastid	36.41	38.82
Zm00001d027763_P001	Maize	plastid	26.73	38.67
HORVU4Hr1G073730.1	Barley	peroxisome, plastid	27.65	38.1
TraesCS5B01G442200.1	Wheat	plastid	32.26	37.33
TraesCS5A01G439200.1	Wheat	plastid	32.03	37.07
TraesCS5D01G446400.1	Wheat	plastid	32.26	36.75
EER93295	Sorghum	plastid	32.72	36.13
Os03t0796600-01	Rice	cytosol, nucleus, plastid	32.95	35.31
Zm00001d018962_P001	Maize	mitochondrion, plastid	30.88	34.99
Zm00001d034444_P002	Maize	plastid	32.26	34.57
HORVU5Hr1G105950.2	Barley	plastid	31.57	33.66
Zm00001d007820_P002	Maize	plastid	30.65	33.17
EER98072	Sorghum	cytosol, plastid	31.34	28.69
PGSC0003DMT400008686	Potato	cytosol	15.9	25.18
PGSC0003DMT400033381	Potato	cytosol, mitochondrion, nucleus	17.05	24.18
PGSC0003DMT400053173	Potato	nucleus	16.59	24.08
PGSC0003DMT400051812	Potato	nucleus	16.36	23.91
PGSC0003DMT400076442	Potato	nucleus	16.36	23.51
PGSC0003DMT400047228	Potato	nucleus	15.21	23.24
PGSC0003DMT400025041	Potato	cytosol	16.59	23.08
PGSC0003DMT400045914	Potato	cytosol, extracellular, nucleus	13.59	21.07

Protein Annotations

EnsemblPlants:PGSC0003DMT400049773	EnsemblPlantsGene:PGSC0003DMG400019337	EntrezGene:102605085	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF5
PFAM:PF04720	PGSC:PGSC0003DMG400019337	RefSeq:XP_006349734.1	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI00029632FE
UniProt:M1BPB0	MapMan:35.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400019337]

Coordinates

chr9:+:48639777..48642730

Molecular Weight (calculated)

48424.7 Da

IEP (calculated)

6.330

GRAVY (calculated)

-0.504

Length

434 amino acids

Sequence
(BLAST)

001: MPFPMKIQPV DFTTVEESSR YDSFKPVPKS RFKRLFERQF SGLLRSSAPE KLVTGEDLIG NKKDASEEFE PSSVCLAKMV QTFIEEGEDK HRCNRSRCNC
101: FNCNGTESSE EENDSVNCFG ESNQNCCSDA CEILKSLVSC PSLLERNVLA EITKIIEKNR MVKRKANFIR KMVVDGLLAM EYDASICESR WEKTPSTPAG
201: AYEYIDVVTE GERLIIDIDF RSEFEIARST RSYKCLLQVL PNIFVGKADR LQKIVHLLTE AAKLSLKKKG MPCPPWRKAE YVKAKWLSTY TRMTPVLMPI
301: ASNSASEPGT ACKTKQEAIK EETSEDSRGE LNLVFGGKSS PLVENNPKSA STSSLFACDD EKNVTVKLGD VFGGKSSPLA ENNTKRASTS PLFACDDEKN
401: PMAQLGEPLE IKPKDSSNCT RKITGLTSLI EDHT

Best Arabidopsis Sequence Match ( AT3G22970.1 )
(BLAST)

001: MPFTMKIQPI DIDSSPTVAR AESGNKPVLK SRLKRLFDRP FTNVLRNSTT TTTEKPFVVT GGEVQCGGVV TEFEPSSVCL AKMVQNFIEE NNEKQAKCGR
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP

Arabidopsis Description

At3g22970 [Source:UniProtKB/TrEMBL;Acc:Q9LIJ8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.