Factsheet for PGSC0003DMT400076442

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g078150.2.1	Tomato	nucleus	97.35	95.45
PGSC0003DMT400033381	Potato	cytosol, mitochondrion, nucleus	66.23	65.36
KRH10888	Soybean	mitochondrion	52.32	52.67
VIT_00s0265g00090.t01	Wine grape	mitochondrion	53.31	52.1
KRH21430	Soybean	mitochondrion, nucleus	50.66	50.66
PGSC0003DMT400047228	Potato	nucleus	45.7	48.59
KRH20449	Soybean	mitochondrion	51.66	47.42
KRH50053	Soybean	mitochondrion	50.0	46.89
GSMUA_Achr7P24960_001	Banana	cytosol	42.05	46.35
GSMUA_Achr3P31780_001	Banana	cytosol	43.05	45.3
GSMUA_Achr4P02600_001	Banana	nucleus	41.06	44.6
HORVU3Hr1G071220.1	Barley	nucleus	37.42	43.13
EES01469	Sorghum	nucleus	39.07	41.84
TraesCS3B01G307800.1	Wheat	nucleus	38.08	41.22
Zm00001d043444_P001	Maize	nucleus	38.74	41.2
TraesCS3D01G273300.1	Wheat	nucleus	36.42	39.71
TraesCS3A01G274100.1	Wheat	nucleus	36.42	39.43
HORVU1Hr1G076120.1	Barley	nucleus	35.1	37.72
TraesCS1D01G341700.1	Wheat	cytosol	35.76	37.24
TraesCS1B01G352000.1	Wheat	nucleus	35.1	37.06
TraesCS1A01G339700.1	Wheat	cytosol	35.43	36.77
Os05t0519300-01	Rice	cytosol	37.09	36.6
EES19824	Sorghum	cytosol	36.09	36.21
PGSC0003DMT400079089	Potato	cytosol	15.56	30.92
PGSC0003DMT400008686	Potato	cytosol	22.19	24.45
PGSC0003DMT400045914	Potato	cytosol, extracellular, nucleus	22.19	23.93
PGSC0003DMT400053173	Potato	nucleus	22.85	23.08
PGSC0003DMT400051812	Potato	nucleus	22.52	22.9
PGSC0003DMT400041951	Potato	cytosol	24.17	19.73
PGSC0003DMT400015576	Potato	cytosol, plastid	24.17	18.43
PGSC0003DMT400025041	Potato	cytosol	18.21	17.63
PGSC0003DMT400049773	Potato	nucleus	23.51	16.36

Protein Annotations

EnsemblPlants:PGSC0003DMT400076442	EnsemblPlantsGene:PGSC0003DMG400029727	EntrezGene:102589326	EntrezGene:102589652	InterPro:PDDEXK-like	PANTHER:PTHR31579
PANTHER:PTHR31579:SF2	PFAM:PF04720	PGSC:PGSC0003DMG400029727	RefSeq:XP_006347032.1	SEG:seg	TIGRFAMs:TIGR01615
UniParc:UPI0002958D44	UniProt:M1CWS3	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400029727]

Coordinates

chr2:+:33923115..33924499

Molecular Weight (calculated)

34384.2 Da

IEP (calculated)

7.860

GRAVY (calculated)

-0.501

Length

302 amino acids

Sequence
(BLAST)

001: MVGVMARKPL NHRILTWDHR EIEISGEPTI NNSDTVFSFL DEEVQSSSPE SINDDVYVNN RDDEDDDKEN VEDNQFWENQ HQLLQSVLCR TTSLESQIRS
101: ITKETKQSEN GCSCRKMVGD GCRNCLMKEV SSRLQNAGFN SAICKSKWKS SPDIPSGEHT FIDVVDNSSL KKGEVRIIIE VNFRCEFELA KASEGYNRLV
201: KCLPEVFVGK IERLLSVIKI LCNGAKKCMK VKKIHVAPWR KQKYMQAKWL KTVERTAANV KLPVSNAEYT SDPLPRRPRA SMLTMDLLEF VPNLHCTAVK
301: VA

Best Arabidopsis Sequence Match ( AT4G32480.1 )
(BLAST)

001: MDRQSSDDIM KFLDGMASSD DVLFGFLDEG NHSPEDYNFA AGDESEVDND TTDCNSEENR KFWQEHEQLL QATLYRTSSI ETKIRQATKE ALKVVRSKGL
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV

Arabidopsis Description

AT4g32480/F8B4_180 [Source:UniProtKB/TrEMBL;Acc:Q9SUU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.