Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400063189 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07350.1 | PGSC0003DMT400063189 | AT3G48150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400051812 | Potato | nucleus | 59.12 | 54.55 |
| PGSC0003DMT400053173 | Potato | nucleus | 56.93 | 52.17 |
| Solyc09g057760.2.1 | Tomato | nucleus | 36.13 | 45.83 |
| Bra040373.1-P | Field mustard | plastid | 30.66 | 43.75 |
| VIT_00s0337g00040.t01 | Wine grape | cytosol | 43.8 | 42.55 |
| Bra029641.1-P | Field mustard | nucleus | 43.07 | 39.33 |
| CDY35924 | Canola | nucleus | 41.61 | 38.0 |
| AT3G25240.1 | Thale cress | cytosol | 38.69 | 37.72 |
| AT3G07350.1 | Thale cress | nucleus | 40.51 | 37.25 |
| CDY28060 | Canola | cytosol, nucleus, plastid | 40.51 | 37.0 |
| CDY15101 | Canola | nucleus | 37.23 | 36.69 |
| CDY52283 | Canola | nucleus | 37.59 | 36.52 |
| Bra013223.1-P | Field mustard | nucleus | 37.59 | 36.52 |
| CDY60822 | Canola | nucleus | 38.69 | 35.45 |
| KRH07392 | Soybean | nucleus | 38.69 | 35.45 |
| PGSC0003DMT400079089 | Potato | cytosol | 19.34 | 34.87 |
| CDY34904 | Canola | nucleus | 38.32 | 34.77 |
| KRH46613 | Soybean | mitochondrion, nucleus | 35.77 | 34.39 |
| GSMUA_Achr6P21070_001 | Banana | cytosol | 30.66 | 28.19 |
| TraesCS4D01G188800.1 | Wheat | mitochondrion | 28.83 | 26.42 |
| Os01t0915000-01 | Rice | cytosol | 27.01 | 25.26 |
| Zm00001d042376_P001 | Maize | cytosol | 26.64 | 24.83 |
| Zm00001d012069_P001 | Maize | mitochondrion | 25.91 | 24.65 |
| TraesCS4B01G187500.1 | Wheat | mitochondrion | 26.64 | 24.41 |
| EES04096 | Sorghum | cytosol | 26.28 | 24.32 |
| TraesCS3B01G456400.1 | Wheat | cytosol | 25.55 | 24.31 |
| HORVU4Hr1G054810.1 | Barley | mitochondrion | 25.91 | 24.23 |
| TraesCS3D01G416400.1 | Wheat | cytosol | 25.55 | 23.97 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 17.88 | 23.56 |
| TraesCS3A01G420900.1 | Wheat | cytosol | 24.82 | 23.45 |
| Os11t0437600-01 | Rice | plastid | 25.55 | 22.88 |
| TraesCS4A01G116900.1 | Wheat | plastid | 26.64 | 22.39 |
| PGSC0003DMT400076442 | Potato | nucleus | 24.45 | 22.19 |
| PGSC0003DMT400033381 | Potato | cytosol, mitochondrion, nucleus | 24.09 | 21.57 |
| PGSC0003DMT400041951 | Potato | cytosol | 28.47 | 21.08 |
| PGSC0003DMT400047228 | Potato | nucleus | 21.17 | 20.42 |
| PGSC0003DMT400015576 | Potato | cytosol, plastid | 28.83 | 19.95 |
| PGSC0003DMT400025041 | Potato | cytosol | 21.53 | 18.91 |
| PGSC0003DMT400045914 | Potato | cytosol, extracellular, nucleus | 18.61 | 18.21 |
| HORVU3Hr1G093260.1 | Barley | plastid | 26.28 | 17.78 |
| PGSC0003DMT400049773 | Potato | nucleus | 25.18 | 15.9 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400008686 | EnsemblPlantsGene:PGSC0003DMG400003367 | EntrezGene:107063386 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF4 |
| PFAM:PF04720 | PGSC:PGSC0003DMG400003367 | RefSeq:XP_015170701.1 | TIGRFAMs:TIGR01615 | UniParc:UPI000296EC85 | UniProt:M0ZUX9 |
| MapMan:35.2 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400003367]
Coordinates
chr9:+:20711525..20712601
Molecular Weight (calculated)
31445.7 Da
IEP (calculated)
7.880
GRAVY (calculated)
-0.369
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MQVFRSMKRV TIPFDDKTKG QIIGRDQQAD QIGYHADDDA LVFGLPDGVA ENDSDFDHTQ VSMYDSREVI EDVPIPVFCN IDLDLFQNSL WTTVTKALEL
101: FSFLKSNKPI LQQNVMKYLR DFGYNSAICK TKWESSSGSV KGGNYEFIDV IRSDSSNQMI TRYIIDLDFA AEFEIARPTN HYKRMLQSLQ KVFVGKSEEL
201: KQILKVMSEA VRRSMRSKEL HIPPWRKQGF MQNKWLGAYK RTTNILPSLN LPPVKHTDIV QCCSVGFNAA VNCY
101: FSFLKSNKPI LQQNVMKYLR DFGYNSAICK TKWESSSGSV KGGNYEFIDV IRSDSSNQMI TRYIIDLDFA AEFEIARPTN HYKRMLQSLQ KVFVGKSEEL
201: KQILKVMSEA VRRSMRSKEL HIPPWRKQGF MQNKWLGAYK RTTNILPSLN LPPVKHTDIV QCCSVGFNAA VNCY
001: MGFSRAKRVT DPLAEEVRAR LVGCSFSSGS EHTGDGIEDY EDDDSPCLSD LVQGFLEDEV DTVDDESCWC DQDSGSDSDS DSELGELPDF ADDIAKLLRN
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
Arabidopsis Description
F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.