Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0675000-01 | |
| Os01t0760300-01 | |
| Os02t0656300-01 | |
| Os05t0560100-01 | |
| Os06t0679100-00 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d042376_P001 | Maize | cytosol | 80.89 | 80.61 |
| EES04096 | Sorghum | cytosol | 80.2 | 79.39 |
| TraesCS3B01G456400.1 | Wheat | cytosol | 76.79 | 78.12 |
| TraesCS3A01G420900.1 | Wheat | cytosol | 77.13 | 77.93 |
| TraesCS3D01G416400.1 | Wheat | cytosol | 77.13 | 77.4 |
| Zm00001d012069_P001 | Maize | mitochondrion | 75.43 | 76.74 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 38.91 | 54.81 |
| HORVU3Hr1G093260.1 | Barley | plastid | 72.01 | 52.1 |
| Os11t0437600-01 | Rice | plastid | 41.64 | 39.87 |
| Bra040373.1-P | Field mustard | plastid | 24.23 | 36.98 |
| VIT_00s0337g00040.t01 | Wine grape | cytosol | 32.76 | 34.04 |
| Bra029641.1-P | Field mustard | nucleus | 34.81 | 34.0 |
| AT3G07350.1 | Thale cress | nucleus | 34.47 | 33.89 |
| Solyc06g007580.1.1 | Tomato | nucleus | 34.47 | 33.78 |
| CDY35924 | Canola | nucleus | 34.47 | 33.67 |
| CDY28060 | Canola | cytosol, nucleus, plastid | 34.13 | 33.33 |
| CDY60822 | Canola | nucleus | 33.45 | 32.78 |
| PGSC0003DMT400053173 | Potato | nucleus | 33.45 | 32.78 |
| CDY34904 | Canola | nucleus | 33.45 | 32.45 |
| Os10t0417800-01 | Rice | plastid | 33.11 | 32.23 |
| KRH46613 | Soybean | mitochondrion, nucleus | 31.06 | 31.93 |
| AT3G25240.1 | Thale cress | cytosol | 30.38 | 31.67 |
| Os03t0162500-01 | Rice | plastid | 32.08 | 30.62 |
| Bra013223.1-P | Field mustard | nucleus | 29.35 | 30.5 |
| CDY52283 | Canola | nucleus | 29.01 | 30.14 |
| KRH07392 | Soybean | nucleus | 30.72 | 30.1 |
| Solyc06g083160.1.1 | Tomato | nucleus | 29.69 | 29.69 |
| CDY15101 | Canola | nucleus | 27.99 | 29.5 |
| PGSC0003DMT400051812 | Potato | nucleus | 29.35 | 28.96 |
| PGSC0003DMT400008686 | Potato | cytosol | 25.26 | 27.01 |
| Os02t0720400-00 | Rice | nucleus | 29.35 | 25.98 |
| Os05t0519300-01 | Rice | cytosol | 25.6 | 24.51 |
| Os03t0796600-01 | Rice | cytosol, nucleus, plastid | 32.42 | 23.46 |
| Solyc09g057760.2.1 | Tomato | nucleus | 16.38 | 22.22 |
| Os01t0879600-00 | Rice | plastid | 21.5 | 20.86 |
| Os01t0973600-01 | Rice | plastid | 23.89 | 20.77 |
Protein Annotations
| EMBL:AK107951 | EnsemblPlants:Os01t0915000-01 | EnsemblPlantsGene:Os01g0915000 | EntrezGene:4324350 | InterPro:PDDEXK-like | PANTHER:PTHR31579 |
| PANTHER:PTHR31579:SF9 | PFAM:PF04720 | ProteinID:BAB92668.1 | ProteinID:BAF07098.1 | ProteinID:BAS75870.1 | RefSeq:XP_015623145.1 |
| SEG:seg | TIGRFAMs:TIGR01615 | UniParc:UPI00000A0539 | UniProt:Q8LQF7 | MapMan:35.2 | : |
Description
Protein of unknown function DUF506, plant family protein. (Os01t0915000-01)
Coordinates
chr1:-:39866435..39867460
Molecular Weight (calculated)
30430.9 Da
IEP (calculated)
9.040
GRAVY (calculated)
-0.134
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVYIRLDDA VRARLRGDAG SSASSGSEHE ASACLSGLVQ AFLETEGAAA GEDGAGPASK GGEGYDSDDG DGPERAAAAA ESVRELLDPP VEEDPFRVRL
101: AAAVAAAMEA EPALRRYGAA FRRAVARRLR AAGYDAGVCK SRWEASGGIT AGTYEYVDVV APAARGQKSR YIVDADFRAG LEVARATAEY AVVVAAVPAS
201: VVVAREEAVG RAVRVAADAA RRSLRSHGLH VPPWRKTRYM LAKWLGPYKR STATSPSAAG AMPMPAAAAG MDVKCRAVGF FTPPPAAPAA RIK
101: AAAVAAAMEA EPALRRYGAA FRRAVARRLR AAGYDAGVCK SRWEASGGIT AGTYEYVDVV APAARGQKSR YIVDADFRAG LEVARATAEY AVVVAAVPAS
201: VVVAREEAVG RAVRVAADAA RRSLRSHGLH VPPWRKTRYM LAKWLGPYKR STATSPSAAG AMPMPAAAAG MDVKCRAVGF FTPPPAAPAA RIK
001: MGFSRAKRVT DPLAEEVRAR LVGCSFSSGS EHTGDGIEDY EDDDSPCLSD LVQGFLEDEV DTVDDESCWC DQDSGSDSDS DSELGELPDF ADDIAKLLRN
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
Arabidopsis Description
F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.