Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- peroxisome 1
- mitochondrion 1
- plastid 1
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0218200-00 | |
| Os05t0210600-01 | |
| Os05t0587300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G20670.1 | Os01t0218200-00 | AT2G42580.1 | 19000166 |
| AT2G20670.1 | Os05t0210600-01 | AT2G42580.1 | 19000166 |
| AT2G20670.1 | Os05t0587300-01 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES19824 | Sorghum | cytosol | 71.9 | 73.09 |
| TraesCS1B01G352000.1 | Wheat | nucleus | 65.36 | 69.93 |
| TraesCS1A01G339700.1 | Wheat | cytosol | 66.34 | 69.76 |
| HORVU1Hr1G076120.1 | Barley | nucleus | 64.05 | 69.75 |
| TraesCS1D01G341700.1 | Wheat | cytosol | 66.01 | 69.66 |
| GSMUA_Achr3P31780_001 | Banana | cytosol | 48.37 | 51.57 |
| GSMUA_Achr7P24960_001 | Banana | cytosol | 43.14 | 48.18 |
| GSMUA_Achr4P02600_001 | Banana | nucleus | 43.46 | 47.84 |
| VIT_12s0028g03560.t01 | Wine grape | cytosol | 38.89 | 39.27 |
| VIT_00s0265g00090.t01 | Wine grape | mitochondrion | 39.54 | 39.16 |
| KRH25597 | Soybean | nucleus | 36.27 | 38.68 |
| KRH10888 | Soybean | mitochondrion | 37.58 | 38.33 |
| PGSC0003DMT400076442 | Potato | nucleus | 36.6 | 37.09 |
| CDX81975 | Canola | nucleus | 35.62 | 36.82 |
| CDY13861 | Canola | nucleus | 35.29 | 36.49 |
| CDY18979 | Canola | nucleus | 35.62 | 36.45 |
| Bra031136.1-P | Field mustard | nucleus | 34.97 | 36.39 |
| CDY05782 | Canola | nucleus | 35.29 | 36.36 |
| Bra036492.1-P | Field mustard | nucleus | 35.29 | 36.36 |
| CDY29898 | Canola | nucleus | 34.97 | 36.27 |
| Bra024209.1-P | Field mustard | nucleus | 34.97 | 36.27 |
| KRH21430 | Soybean | mitochondrion, nucleus | 35.29 | 35.76 |
| Solyc02g078150.2.1 | Tomato | nucleus | 35.95 | 35.71 |
| CDY31947 | Canola | nucleus | 34.64 | 35.69 |
| Bra026262.1-P | Field mustard | nucleus | 34.64 | 35.45 |
| CDY49659 | Canola | nucleus | 34.64 | 35.45 |
| CDX92863 | Canola | nucleus | 33.99 | 35.25 |
| PGSC0003DMT400047228 | Potato | nucleus | 32.68 | 35.21 |
| PGSC0003DMT400033381 | Potato | cytosol, mitochondrion, nucleus | 34.97 | 34.97 |
| AT4G32480.1 | Thale cress | nucleus | 32.68 | 34.84 |
| Solyc03g006410.2.1 | Tomato | cytosol | 34.31 | 34.54 |
| AT2G20670.1 | Thale cress | nucleus | 32.68 | 34.01 |
| KRH20449 | Soybean | mitochondrion | 35.62 | 33.13 |
| Solyc02g078160.2.1 | Tomato | nucleus | 32.35 | 32.78 |
| KRH50053 | Soybean | mitochondrion | 34.31 | 32.61 |
| Solyc07g053900.2.1 | Tomato | cytosol | 32.68 | 31.25 |
| Os10t0417800-01 | Rice | plastid | 25.49 | 25.91 |
| Os01t0915000-01 | Rice | cytosol | 24.51 | 25.6 |
| Os03t0162500-01 | Rice | plastid | 25.16 | 25.08 |
| Os02t0720400-00 | Rice | nucleus | 25.82 | 23.87 |
| Os11t0437600-01 | Rice | plastid | 22.55 | 22.55 |
| Os03t0796600-01 | Rice | cytosol, nucleus, plastid | 27.78 | 20.99 |
| Os01t0879600-00 | Rice | plastid | 20.59 | 20.86 |
| Os01t0973600-01 | Rice | plastid | 20.91 | 18.99 |
Protein Annotations
| EMBL:AK110584 | EnsemblPlants:Os05t0519300-01 | EnsemblPlantsGene:Os05g0519300 | EntrezGene:4339339 | InterPro:PDDEXK-like | PANTHER:PTHR31579 |
| PANTHER:PTHR31579:SF7 | PFAM:PF04720 | ProteinID:AAU44260.1 | ProteinID:BAF17976.1 | ProteinID:BAS94916.1 | RefSeq:XP_015639750.1 |
| SEG:seg | TIGRFAMs:TIGR01615 | UniParc:UPI000043F4AC | UniProt:Q65X09 | MapMan:35.2 | : |
Description
Protein of unknown function DUF506, plant family protein. (Os05t0519300-01)
Coordinates
chr5:-:25776481..25778593
Molecular Weight (calculated)
32171.1 Da
IEP (calculated)
7.130
GRAVY (calculated)
-0.267
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVEEAVVAA GNEMSLSNMV LGFYEEAELQ SSPPGDCAAA AGDDDDGSDD EGSGGAAKCR AFWKEQQSQL YEALAKMSSA ESRIQADAEE AMRQMRAAAA
101: GACSCASRGA AAAAAGSGGC RSCTLRFLAE RLRDAGYNSA ICRSKWPRSP EIPSGEHSYV DVVAPTRSGK AVRVVVEPSF RGEFEMARGG AGYRALVASL
201: PEAFVGRADR LRGVVRVMCA AAKQCARESG MHMAPWRKQR YMEAKWLATP ERVAPPGNAG GAGDAVAVGS PSSPLSPGMT NRQMQPKFRA SMLTLDFGGR
301: TAVEVV
101: GACSCASRGA AAAAAGSGGC RSCTLRFLAE RLRDAGYNSA ICRSKWPRSP EIPSGEHSYV DVVAPTRSGK AVRVVVEPSF RGEFEMARGG AGYRALVASL
201: PEAFVGRADR LRGVVRVMCA AAKQCARESG MHMAPWRKQR YMEAKWLATP ERVAPPGNAG GAGDAVAVGS PSSPLSPGMT NRQMQPKFRA SMLTLDFGGR
301: TAVEVV
001: MDRQSSDDIM KFLDGMASSD DVLFGFLDEG NHSPEDYNFA AGDESEVDND TTDCNSEENR KFWQEHEQLL QATLYRTSSI ETKIRQATKE ALKVVRSKGL
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
Arabidopsis Description
AT4g32480/F8B4_180 [Source:UniProtKB/TrEMBL;Acc:Q9SUU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.