Factsheet for VIT_00s0265g00090.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10888	Soybean	mitochondrion	59.87	61.67
KRH21430	Soybean	mitochondrion, nucleus	56.63	57.95
VIT_12s0028g03560.t01	Wine grape	cytosol	53.72	54.79
Solyc03g006410.2.1	Tomato	cytosol	52.75	53.62
KRH20449	Soybean	mitochondrion	56.96	53.5
PGSC0003DMT400076442	Potato	nucleus	52.1	53.31
Solyc02g078160.2.1	Tomato	nucleus	51.13	52.32
PGSC0003DMT400033381	Potato	cytosol, mitochondrion, nucleus	51.78	52.29
KRH50053	Soybean	mitochondrion	54.37	52.17
Solyc02g078150.2.1	Tomato	nucleus	51.78	51.95
GSMUA_Achr7P24960_001	Banana	cytosol	43.37	48.91
EES01469	Sorghum	nucleus	44.01	48.23
GSMUA_Achr3P31780_001	Banana	cytosol	44.01	47.39
Zm00001d043444_P001	Maize	nucleus	43.04	46.83
GSMUA_Achr4P02600_001	Banana	nucleus	42.07	46.76
HORVU3Hr1G071220.1	Barley	nucleus	39.48	46.56
TraesCS3B01G307800.1	Wheat	nucleus	40.78	45.16
TraesCS3A01G274100.1	Wheat	nucleus	39.81	44.09
TraesCS3D01G273300.1	Wheat	nucleus	39.48	44.04
HORVU1Hr1G076120.1	Barley	nucleus	38.84	42.7
EES19824	Sorghum	cytosol	41.1	42.19
TraesCS1D01G341700.1	Wheat	cytosol	38.51	41.03
TraesCS1B01G352000.1	Wheat	nucleus	37.22	40.21
TraesCS1A01G339700.1	Wheat	cytosol	37.54	39.86
Os05t0519300-01	Rice	cytosol	39.16	39.54
VIT_18s0001g06070.t01	Wine grape	nucleus	23.95	27.61
VIT_00s0337g00040.t01	Wine grape	cytosol	23.62	25.89
VIT_18s0001g15610.t01	Wine grape	cytosol	20.71	23.19
VIT_13s0019g01100.t01	Wine grape	nucleus	20.06	22.79
VIT_05s0020g04500.t01	Wine grape	nucleus	27.18	21.76
VIT_12s0059g01640.t01	Wine grape	nucleus	21.04	21.59
VIT_04s0044g00970.t01	Wine grape	cytosol	18.77	21.4
VIT_00s0179g00360.t01	Wine grape	cytosol	24.6	19.14

Protein Annotations

ArrayExpress:VIT_00s0265g00090	EMBL:FN595499	EnsemblPlants:VIT_00s0265g00090.t01	EnsemblPlantsGene:VIT_00s0265g00090	EntrezGene:100261530	EntrezGene:LOC100261530
InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF2	PFAM:PF04720	ProteinID:CCB48817	ProteinID:CCB48817.1
RefSeq:XP_002263191	RefSeq:XP_002263191.1	SEG:seg	TIGRFAMs:TIGR01615	unigene:Vvi.2157	unigene:Vvi.26442
UniParc:UPI00015CD9EA	UniProt:F6H9C4	wikigene:100261530	wikigene:LOC100261530	MapMan:35.2	:

Description

No Description!

Coordinates

chrUn:-:19215637..19217032

Molecular Weight (calculated)

34532.4 Da

IEP (calculated)

8.064

GRAVY (calculated)

-0.404

Length

309 amino acids

Sequence
(BLAST)

001: MARATARIPA IHRNFLSANL ELGFTAGQAA SLSDMAFGFL EDGEGWPESF SSTGGCSENG ALDDDEDDAD KEKNSSSVEE NKNFWESQHQ ILHTTLCRTS
101: SLELGIRNAT KEALKEIQMD DNVCVCLRPV VGGCRSCLLR EVSDRLRNAG YNSAICKSKW RSSPNIPSGE HTFLDVVHNS SAKKGEVRVI IELNFRAEFE
201: MARASEEYNR LIRRLPEVFV GKVERLHTLV KILCMAAKKC MKEKKMHMGP WRKHRYMQAK WLSTCVRSTS TSSLLSGDSG RLPKPKASML TVDLMEKLPN
301: MHCTAVEVV

Best Arabidopsis Sequence Match ( AT4G32480.1 )
(BLAST)

001: MDRQSSDDIM KFLDGMASSD DVLFGFLDEG NHSPEDYNFA AGDESEVDND TTDCNSEENR KFWQEHEQLL QATLYRTSSI ETKIRQATKE ALKVVRSKGL
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV

Arabidopsis Description

AT4g32480/F8B4_180 [Source:UniProtKB/TrEMBL;Acc:Q9SUU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.