Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G341700.1 | Wheat | cytosol | 94.85 | 95.17 |
| TraesCS1B01G352000.1 | Wheat | nucleus | 92.78 | 94.41 |
| HORVU1Hr1G076120.1 | Barley | nucleus | 86.94 | 90.04 |
| EES19824 | Sorghum | cytosol | 69.07 | 66.78 |
| Os05t0519300-01 | Rice | cytosol | 69.76 | 66.34 |
| TraesCS3A01G274100.1 | Wheat | nucleus | 60.14 | 62.72 |
| GSMUA_Achr3P31780_001 | Banana | cytosol | 45.02 | 45.64 |
| GSMUA_Achr4P02600_001 | Banana | nucleus | 42.61 | 44.6 |
| GSMUA_Achr7P24960_001 | Banana | cytosol | 41.24 | 43.8 |
| Bra024209.1-P | Field mustard | nucleus | 38.49 | 37.97 |
| CDY29898 | Canola | nucleus | 38.49 | 37.97 |
| VIT_00s0265g00090.t01 | Wine grape | mitochondrion | 39.86 | 37.54 |
| VIT_12s0028g03560.t01 | Wine grape | cytosol | 38.83 | 37.29 |
| CDX92863 | Canola | nucleus | 37.11 | 36.61 |
| CDY18979 | Canola | nucleus | 37.11 | 36.12 |
| CDY05782 | Canola | nucleus | 36.77 | 36.03 |
| KRH25597 | Soybean | nucleus | 35.4 | 35.89 |
| AT4G32480.1 | Thale cress | nucleus | 35.4 | 35.89 |
| CDY49659 | Canola | nucleus | 36.43 | 35.45 |
| Bra026262.1-P | Field mustard | nucleus | 36.43 | 35.45 |
| PGSC0003DMT400076442 | Potato | nucleus | 36.77 | 35.43 |
| CDY31947 | Canola | nucleus | 36.08 | 35.35 |
| Bra036492.1-P | Field mustard | nucleus | 36.08 | 35.35 |
| KRH10888 | Soybean | mitochondrion | 36.43 | 35.33 |
| CDY13861 | Canola | nucleus | 35.74 | 35.14 |
| CDX81975 | Canola | nucleus | 35.74 | 35.14 |
| Bra031136.1-P | Field mustard | nucleus | 35.4 | 35.03 |
| KRH21430 | Soybean | mitochondrion, nucleus | 35.4 | 34.11 |
| Solyc02g078150.2.1 | Tomato | nucleus | 36.08 | 34.09 |
| AT2G20670.1 | Thale cress | nucleus | 34.36 | 34.01 |
| Solyc03g006410.2.1 | Tomato | cytosol | 34.02 | 32.57 |
| KRH50053 | Soybean | mitochondrion | 35.74 | 32.3 |
| KRH20449 | Soybean | mitochondrion | 36.08 | 31.91 |
| PGSC0003DMT400033381 | Potato | cytosol, mitochondrion, nucleus | 33.33 | 31.7 |
| PGSC0003DMT400047228 | Potato | nucleus | 30.93 | 31.69 |
| Solyc02g078160.2.1 | Tomato | nucleus | 30.93 | 29.8 |
| Solyc07g053900.2.1 | Tomato | cytosol | 31.27 | 28.44 |
| TraesCS3A01G409700.1 | Wheat | cytosol | 23.37 | 28.1 |
| TraesCS3A01G420900.1 | Wheat | cytosol | 27.15 | 27.24 |
| TraesCS6A01G283100.1 | Wheat | cytosol | 28.18 | 26.37 |
| TraesCS4A01G025500.1 | Wheat | peroxisome, plastid | 26.46 | 24.44 |
| TraesCS5A01G439200.1 | Wheat | plastid | 30.24 | 23.47 |
| TraesCS4A01G116900.1 | Wheat | plastid | 23.37 | 20.86 |
| TraesCS3A01G530700.1 | Wheat | plastid | 21.31 | 17.97 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G339700.1 | EnsemblPlantsGene:TraesCS1A01G339700 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF7 | PFAM:PF04720 |
| SEG:seg | TIGRFAMs:TIGR01615 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1A:-:530177277..530178267
Molecular Weight (calculated)
30655.1 Da
IEP (calculated)
7.996
GRAVY (calculated)
-0.236
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVAEAGDEM SLSNMVLGFY EEADRERRPE DETTVGDGGC SDDERAGGGA AAESSAFWAE QLSHLHEVLG KMSSAESRIR ADTEEAVRHA RSGTATAAAG
101: VCSSCATRAT AGGGCRGCTL RSVAARLRDA GYDSAVCRSR WARSAEFPAG EHSYVDVVVP TRSGRAVRVV VEPSFRAEFA MARGGAGYGA LVAALPEAFV
201: GRAEKLRAVV AAMCAAAKRC ARESSLHMAP WRKRRYMEAK WLGTPDRLLA TTGAGAGAPV AAGSPESEKQ RRFRASMLTL DFGGRTAVEV A
101: VCSSCATRAT AGGGCRGCTL RSVAARLRDA GYDSAVCRSR WARSAEFPAG EHSYVDVVVP TRSGRAVRVV VEPSFRAEFA MARGGAGYGA LVAALPEAFV
201: GRAEKLRAVV AAMCAAAKRC ARESSLHMAP WRKRRYMEAK WLGTPDRLLA TTGAGAGAPV AAGSPESEKQ RRFRASMLTL DFGGRTAVEV A
001: MDRQNSDDIM RFLDGMASSD DVLFGFLDEG NQSPEDFSVN LNAGEDDGDE DDNNNNSEDN KAFWQEHEQL LQGTLYRTSS IETKIRQATK EALKQVKSKG
101: LYCVCRRPVD GGCRSCLRGE ISRHLRDVAG YDCVISKSKW RSCQDIPAGE HEFIEIVDRS GSKKSEMRVV IELSFRAEFE IAKGSEEYKR LISRLPEVYV
201: GKTERLRSLI KILCIAGKKC LRDKKMHMAP WRKHKYMQAK WLGTCDRSSS LEASVSEAME PENWVPVAKP RVSMLNYDGL LGGFSAGPAT VAVV
101: LYCVCRRPVD GGCRSCLRGE ISRHLRDVAG YDCVISKSKW RSCQDIPAGE HEFIEIVDRS GSKKSEMRVV IELSFRAEFE IAKGSEEYKR LISRLPEVYV
201: GKTERLRSLI KILCIAGKKC LRDKKMHMAP WRKHKYMQAK WLGTCDRSSS LEASVSEAME PENWVPVAKP RVSMLNYDGL LGGFSAGPAT VAVV
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SIU5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.