Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036492.1-P | Field mustard | nucleus | 88.1 | 87.21 |
| CDY31947 | Canola | nucleus | 87.76 | 86.87 |
| Bra031136.1-P | Field mustard | nucleus | 86.73 | 86.73 |
| CDY05782 | Canola | nucleus | 87.07 | 86.2 |
| CDX81975 | Canola | nucleus | 86.39 | 85.81 |
| CDY13861 | Canola | nucleus | 85.37 | 84.8 |
| AT4G32480.1 | Thale cress | nucleus | 73.81 | 75.61 |
| VIT_12s0028g03560.t01 | Wine grape | cytosol | 51.36 | 49.84 |
| KRH25597 | Soybean | nucleus | 43.54 | 44.6 |
| PGSC0003DMT400047228 | Potato | nucleus | 42.18 | 43.66 |
| GSMUA_Achr7P24960_001 | Banana | cytosol | 39.46 | 42.34 |
| GSMUA_Achr3P31780_001 | Banana | cytosol | 39.8 | 40.77 |
| GSMUA_Achr4P02600_001 | Banana | nucleus | 38.44 | 40.65 |
| Solyc07g053900.2.1 | Tomato | cytosol | 43.88 | 40.31 |
| HORVU3Hr1G071220.1 | Barley | nucleus | 35.71 | 40.08 |
| EES01469 | Sorghum | nucleus | 36.73 | 38.3 |
| Zm00001d043444_P001 | Maize | nucleus | 36.39 | 37.68 |
| TraesCS3B01G307800.1 | Wheat | nucleus | 35.37 | 37.28 |
| TraesCS3A01G274100.1 | Wheat | nucleus | 34.69 | 36.56 |
| HORVU1Hr1G076120.1 | Barley | nucleus | 34.69 | 36.3 |
| TraesCS3D01G273300.1 | Wheat | nucleus | 34.01 | 36.1 |
| TraesCS1D01G341700.1 | Wheat | cytosol | 34.69 | 35.17 |
| TraesCS1B01G352000.1 | Wheat | nucleus | 34.01 | 34.97 |
| TraesCS1A01G339700.1 | Wheat | cytosol | 34.01 | 34.36 |
| EES19824 | Sorghum | cytosol | 34.01 | 33.22 |
| Os05t0519300-01 | Rice | cytosol | 34.01 | 32.68 |
| AT3G25240.1 | Thale cress | cytosol | 20.41 | 21.35 |
| AT1G77145.1 | Thale cress | cytosol | 17.69 | 20.0 |
| AT4G14620.1 | Thale cress | cytosol | 23.13 | 19.94 |
| AT3G07350.1 | Thale cress | nucleus | 20.07 | 19.8 |
| AT3G54550.1 | Thale cress | plastid | 19.39 | 19.79 |
| AT1G77160.1 | Thale cress | cytosol | 17.69 | 19.77 |
| AT1G62420.1 | Thale cress | cytosol | 18.37 | 19.08 |
| AT2G39650.1 | Thale cress | cytosol | 18.37 | 18.56 |
| AT1G12030.1 | Thale cress | mitochondrion | 17.69 | 17.63 |
| AT2G38820.2 | Thale cress | cytosol | 18.03 | 17.1 |
| AT3G22970.1 | Thale cress | plastid | 21.09 | 16.76 |
Protein Annotations
| MapMan:35.2 | EntrezGene:816595 | ProteinID:AAD21702.1 | ProteinID:AAM15201.1 | ProteinID:AEC07055.1 | ArrayExpress:AT2G20670 |
| EnsemblPlantsGene:AT2G20670 | RefSeq:AT2G20670 | TAIR:AT2G20670 | RefSeq:AT2G20670-TAIR-G | EnsemblPlants:AT2G20670.1 | TAIR:AT2G20670.1 |
| EMBL:AY087386 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009507 |
| GO:GO:0009536 | RefSeq:NP_565481.1 | InterPro:PDDEXK-like | PFAM:PF04720 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020003 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR31579 |
| PANTHER:PTHR31579:SF33 | UniProt:Q9SIU5 | TIGRFAMs:TIGR01615 | UniParc:UPI00000A3B86 | SEG:seg | : |
Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SIU5]
Coordinates
chr2:-:8911860..8913747
Molecular Weight (calculated)
33204.4 Da
IEP (calculated)
6.372
GRAVY (calculated)
-0.584
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRQNSDDIM RFLDGMASSD DVLFGFLDEG NQSPEDFSVN LNAGEDDGDE DDNNNNSEDN KAFWQEHEQL LQGTLYRTSS IETKIRQATK EALKQVKSKG
101: LYCVCRRPVD GGCRSCLRGE ISRHLRDVAG YDCVISKSKW RSCQDIPAGE HEFIEIVDRS GSKKSEMRVV IELSFRAEFE IAKGSEEYKR LISRLPEVYV
201: GKTERLRSLI KILCIAGKKC LRDKKMHMAP WRKHKYMQAK WLGTCDRSSS LEASVSEAME PENWVPVAKP RVSMLNYDGL LGGFSAGPAT VAVV
101: LYCVCRRPVD GGCRSCLRGE ISRHLRDVAG YDCVISKSKW RSCQDIPAGE HEFIEIVDRS GSKKSEMRVV IELSFRAEFE IAKGSEEYKR LISRLPEVYV
201: GKTERLRSLI KILCIAGKKC LRDKKMHMAP WRKHKYMQAK WLGTCDRSSS LEASVSEAME PENWVPVAKP RVSMLNYDGL LGGFSAGPAT VAVV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.