Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G093390.2 | |
| HORVU3Hr1G027650.2 | |
| HORVU3Hr1G054240.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G20670.1 | HORVU1Hr1G093390.2 | AT2G42580.1 | 19000166 |
| AT2G20670.1 | HORVU3Hr1G027650.2 | AT2G42580.1 | 19000166 |
| AT2G20670.1 | HORVU3Hr1G054240.2 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G273300.1 | Wheat | nucleus | 92.37 | 87.36 |
| TraesCS3B01G307800.1 | Wheat | nucleus | 92.75 | 87.1 |
| TraesCS3A01G274100.1 | Wheat | nucleus | 92.37 | 86.74 |
| EES01469 | Sorghum | nucleus | 74.43 | 69.15 |
| Zm00001d043444_P001 | Maize | nucleus | 71.76 | 66.2 |
| HORVU1Hr1G076120.1 | Barley | nucleus | 63.36 | 59.07 |
| GSMUA_Achr3P31780_001 | Banana | cytosol | 55.73 | 50.87 |
| GSMUA_Achr4P02600_001 | Banana | nucleus | 52.29 | 49.28 |
| GSMUA_Achr7P24960_001 | Banana | cytosol | 51.15 | 48.91 |
| Bra024209.1-P | Field mustard | nucleus | 44.66 | 39.66 |
| CDY29898 | Canola | nucleus | 44.66 | 39.66 |
| VIT_12s0028g03560.t01 | Wine grape | cytosol | 45.8 | 39.6 |
| VIT_00s0265g00090.t01 | Wine grape | mitochondrion | 46.56 | 39.48 |
| KRH25597 | Soybean | nucleus | 42.75 | 39.02 |
| CDX81975 | Canola | nucleus | 43.89 | 38.85 |
| CDY18979 | Canola | nucleus | 44.27 | 38.8 |
| CDX92863 | Canola | nucleus | 43.51 | 38.64 |
| Bra031136.1-P | Field mustard | nucleus | 43.13 | 38.44 |
| CDY13861 | Canola | nucleus | 43.13 | 38.18 |
| AT4G32480.1 | Thale cress | nucleus | 41.6 | 37.98 |
| Bra026262.1-P | Field mustard | nucleus | 43.13 | 37.79 |
| CDY49659 | Canola | nucleus | 43.13 | 37.79 |
| Bra036492.1-P | Field mustard | nucleus | 42.75 | 37.71 |
| CDY05782 | Canola | nucleus | 42.75 | 37.71 |
| PGSC0003DMT400076442 | Potato | nucleus | 43.13 | 37.42 |
| CDY31947 | Canola | nucleus | 42.37 | 37.37 |
| KRH10888 | Soybean | mitochondrion | 42.37 | 37.0 |
| Solyc02g078150.2.1 | Tomato | nucleus | 42.75 | 36.36 |
| PGSC0003DMT400047228 | Potato | nucleus | 38.93 | 35.92 |
| KRH21430 | Soybean | mitochondrion, nucleus | 41.22 | 35.76 |
| AT2G20670.1 | Thale cress | nucleus | 40.08 | 35.71 |
| KRH50053 | Soybean | mitochondrion | 43.13 | 35.09 |
| Solyc03g006410.2.1 | Tomato | cytosol | 40.08 | 34.54 |
| KRH20449 | Soybean | mitochondrion | 43.13 | 34.35 |
| PGSC0003DMT400033381 | Potato | cytosol, mitochondrion, nucleus | 39.69 | 33.99 |
| Solyc02g078160.2.1 | Tomato | nucleus | 38.55 | 33.44 |
| Solyc07g053900.2.1 | Tomato | cytosol | 38.17 | 31.25 |
| HORVU4Hr1G073730.1 | Barley | peroxisome, plastid | 29.39 | 24.44 |
| HORVU3Hr1G091440.2 | Barley | cytosol | 22.52 | 24.28 |
| HORVU5Hr1G105950.2 | Barley | plastid | 30.92 | 19.9 |
| HORVU4Hr1G054810.1 | Barley | mitochondrion | 22.14 | 19.8 |
| HORVU3Hr1G115940.1 | Barley | plastid | 27.1 | 16.78 |
| HORVU3Hr1G093260.1 | Barley | plastid | 22.9 | 14.81 |
Protein Annotations
| EMBL:AK368297 | EMBL:AK368302 | EnsemblPlants:HORVU3Hr1G071220.1 | EnsemblPlantsGene:HORVU3Hr1G071220 | InterPro:PDDEXK-like | PANTHER:PTHR31579 |
| PANTHER:PTHR31579:SF2 | PFAM:PF04720 | SEG:seg | TIGRFAMs:TIGR01615 | UniParc:UPI0002007310 | UniProt:F2DWM9 |
| MapMan:35.2 | : | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DWM9]
Coordinates
chrchr3H:+:538785888..538788235
Molecular Weight (calculated)
28916.4 Da
IEP (calculated)
7.437
GRAVY (calculated)
-0.435
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVEEAMDGD MSLSNMVLSF LEEGETERWP ENDDEEEDEE GSAESKAFWR AQHSQLHEAL GKTSAAEGRI RAVTEEAVGK RAVCSCARRA AAGDCRSCML
101: RHAVERLRDA GYNGAICRSK WARSLDIPSG EHSYVDVVLQ TRSGKAVRVV VEPSFRAEFE VARAGAGYRA LVAALPEAYV GRADRLRGVV KAMCAAAKQC
201: MKENKMHLGP WRKHKYMQSK WLGTSSEREA PLLDAVPSPE KQPKLRASML SFDFGRAPVV VA
101: RHAVERLRDA GYNGAICRSK WARSLDIPSG EHSYVDVVLQ TRSGKAVRVV VEPSFRAEFE VARAGAGYRA LVAALPEAYV GRADRLRGVV KAMCAAAKQC
201: MKENKMHLGP WRKHKYMQSK WLGTSSEREA PLLDAVPSPE KQPKLRASML SFDFGRAPVV VA
001: MDRQSSDDIM KFLDGMASSD DVLFGFLDEG NHSPEDYNFA AGDESEVDND TTDCNSEENR KFWQEHEQLL QATLYRTSSI ETKIRQATKE ALKVVRSKGL
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
Arabidopsis Description
AT4g32480/F8B4_180 [Source:UniProtKB/TrEMBL;Acc:Q9SUU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.