Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29898 | Canola | nucleus | 98.31 | 98.31 |
| CDY49659 | Canola | nucleus | 85.08 | 83.95 |
| CDY18979 | Canola | nucleus | 85.08 | 83.95 |
| AT4G32480.1 | Thale cress | nucleus | 81.36 | 83.62 |
| CDY31947 | Canola | nucleus | 73.9 | 73.4 |
| CDY05782 | Canola | nucleus | 73.56 | 73.06 |
| CDX81975 | Canola | nucleus | 72.54 | 72.3 |
| CDY13861 | Canola | nucleus | 70.51 | 70.27 |
| VIT_12s0028g03560.t01 | Wine grape | cytosol | 52.54 | 51.16 |
| KRH25597 | Soybean | nucleus | 45.42 | 46.69 |
| PGSC0003DMT400047228 | Potato | nucleus | 43.73 | 45.42 |
| GSMUA_Achr3P31780_001 | Banana | cytosol | 42.37 | 43.55 |
| HORVU3Hr1G071220.1 | Barley | nucleus | 38.64 | 43.51 |
| GSMUA_Achr4P02600_001 | Banana | nucleus | 39.32 | 41.73 |
| GSMUA_Achr7P24960_001 | Banana | cytosol | 38.64 | 41.61 |
| Zm00001d043444_P001 | Maize | nucleus | 40.0 | 41.55 |
| Solyc07g053900.2.1 | Tomato | cytosol | 44.75 | 41.25 |
| TraesCS3D01G273300.1 | Wheat | nucleus | 38.64 | 41.16 |
| EES01469 | Sorghum | nucleus | 39.32 | 41.13 |
| TraesCS3B01G307800.1 | Wheat | nucleus | 38.31 | 40.5 |
| TraesCS3A01G274100.1 | Wheat | nucleus | 38.31 | 40.5 |
| HORVU1Hr1G076120.1 | Barley | nucleus | 35.93 | 37.72 |
| TraesCS1D01G341700.1 | Wheat | cytosol | 36.95 | 37.59 |
| TraesCS1B01G352000.1 | Wheat | nucleus | 36.27 | 37.41 |
| TraesCS1A01G339700.1 | Wheat | cytosol | 36.61 | 37.11 |
| EES19824 | Sorghum | cytosol | 35.93 | 35.22 |
| Os05t0519300-01 | Rice | cytosol | 35.25 | 33.99 |
| CDY52283 | Canola | nucleus | 20.68 | 21.63 |
| CDY15101 | Canola | nucleus | 20.34 | 21.58 |
| CDY31234 | Canola | cytosol | 20.34 | 20.41 |
| CDY30048 | Canola | mitochondrion | 20.34 | 20.34 |
| CDY21027 | Canola | cytosol | 20.34 | 20.34 |
| CDY53353 | Canola | mitochondrion | 20.0 | 20.14 |
| CDY07644 | Canola | cytosol | 20.34 | 19.93 |
| CDY24955 | Canola | cytosol | 20.34 | 19.87 |
| CDX88346 | Canola | nucleus | 17.29 | 19.84 |
| CDX87538 | Canola | nucleus | 17.29 | 19.84 |
| CDY60822 | Canola | nucleus | 19.66 | 19.4 |
| CDY35924 | Canola | nucleus | 19.66 | 19.33 |
| CDY34904 | Canola | nucleus | 19.66 | 19.21 |
| CDY28060 | Canola | cytosol, nucleus, plastid | 19.32 | 19.0 |
| CDX92970 | Canola | cytosol | 21.02 | 18.62 |
| CDX93300 | Canola | cytosol | 18.31 | 18.0 |
| CDY16266 | Canola | nucleus | 21.69 | 17.93 |
| CDY29750 | Canola | nucleus, plastid | 21.36 | 17.8 |
| CDY14428 | Canola | cytosol | 18.64 | 17.68 |
| CDY18366 | Canola | cytosol | 17.97 | 17.67 |
| CDY07696 | Canola | cytosol | 18.64 | 17.63 |
| CDX88344 | Canola | cytosol | 15.59 | 17.36 |
| CDX94877 | Canola | cytosol | 20.34 | 17.29 |
| CDX88345 | Canola | nucleus | 15.59 | 17.16 |
| CDX87539 | Canola | nucleus | 15.59 | 17.16 |
| CDX87540 | Canola | cytosol | 15.25 | 17.11 |
| CDY10330 | Canola | cytosol | 18.98 | 15.3 |
| CDY10329 | Canola | plastid | 18.64 | 14.55 |
Protein Annotations
| EnsemblPlants:CDX92863 | EnsemblPlantsGene:GSBRNA2T00154700001 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF33 | PFAM:PF04720 |
| ProteinID:CDX92863 | ProteinID:CDX92863.1 | TIGRFAMs:TIGR01615 | UniParc:UPI0004EF404F | MapMan:35.2 | : |
Description
BnaC07g41210D
Coordinates
chrLK031873:+:1219348..1220933
Molecular Weight (calculated)
33190.7 Da
IEP (calculated)
7.359
GRAVY (calculated)
-0.606
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRQNSDDIM KFLDGMASSD DVLFGFLDEG NHSPEDYPDS GSFAGGEESD MDNDAAGCNS EENKTFWNEQ EQLLQATLYR TSSVETKIRQ ATKEALKEVR
101: SKGLQCVCRR PMTGGCRSCL RGEVASRLRD AGYDCVICKS KWRSNHEIPA GEHEFLEIVD KSGSKKGEIR VVIELSFRAE FEMARGSDEY KRLIGILPEV
201: YVGKTERLKS LIKILCTAAK KCMKDKKMHI GPWRKHKYMQ AKWHGTCERK SVMLVDTETE EDKSVMPKPR VSMLNYGIYG NLSSGMGRPA AVAVV
101: SKGLQCVCRR PMTGGCRSCL RGEVASRLRD AGYDCVICKS KWRSNHEIPA GEHEFLEIVD KSGSKKGEIR VVIELSFRAE FEMARGSDEY KRLIGILPEV
201: YVGKTERLKS LIKILCTAAK KCMKDKKMHI GPWRKHKYMQ AKWHGTCERK SVMLVDTETE EDKSVMPKPR VSMLNYGIYG NLSSGMGRPA AVAVV
001: MDRQSSDDIM KFLDGMASSD DVLFGFLDEG NHSPEDYNFA AGDESEVDND TTDCNSEENR KFWQEHEQLL QATLYRTSSI ETKIRQATKE ALKVVRSKGL
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
Arabidopsis Description
AT4g32480/F8B4_180 [Source:UniProtKB/TrEMBL;Acc:Q9SUU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.