Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G77145.1 | CDX73678 | AT3G51920.1 | 17360592 |
| AT1G77145.1 | CDX95314 | AT3G51920.1 | 17360592 |
| AT1G77145.1 | CDY23174 | AT3G51920.1 | 17360592 |
| AT1G77145.1 | CDY06478 | AT4G14640.1 | 17360592 |
| AT1G77145.1 | CDX92401 | AT5G21274.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87538 | Canola | nucleus | 95.72 | 95.72 |
| CDX87539 | Canola | nucleus | 76.26 | 73.13 |
| CDX88345 | Canola | nucleus | 74.32 | 71.27 |
| AT1G77145.1 | Thale cress | cytosol | 71.6 | 70.77 |
| CDX88344 | Canola | cytosol | 69.65 | 67.55 |
| AT1G77160.1 | Thale cress | cytosol | 68.09 | 66.54 |
| CDX87540 | Canola | cytosol | 68.09 | 66.54 |
| PGSC0003DMT400079089 | Potato | cytosol | 22.57 | 38.16 |
| Solyc06g054640.1.1 | Tomato | cytosol | 29.18 | 33.78 |
| GSMUA_Achr7P03040_001 | Banana | nucleus | 32.68 | 32.43 |
| KRH43403 | Soybean | cytosol | 29.96 | 29.06 |
| TraesCS3D01G404300.1 | Wheat | nucleus | 27.24 | 28.46 |
| KRH59552 | Soybean | cytosol | 29.96 | 28.31 |
| TraesCS3A01G409700.1 | Wheat | cytosol | 26.46 | 28.1 |
| TraesCS3B01G442800.1 | Wheat | cytosol | 26.07 | 27.92 |
| VIT_18s0001g15610.t01 | Wine grape | cytosol | 29.96 | 27.9 |
| HORVU3Hr1G091440.2 | Barley | cytosol | 26.07 | 27.57 |
| VIT_04s0044g00970.t01 | Wine grape | cytosol | 28.4 | 26.94 |
| Zm00001d042631_P001 | Maize | cytosol | 21.79 | 26.29 |
| OQU87982 | Sorghum | cytosol | 25.68 | 23.49 |
| Os01t0879600-00 | Rice | plastid | 26.07 | 22.19 |
| CDY60822 | Canola | nucleus | 24.51 | 21.07 |
| CDY21027 | Canola | cytosol | 24.12 | 21.02 |
| CDY34904 | Canola | nucleus | 24.51 | 20.86 |
| CDY31234 | Canola | cytosol | 23.74 | 20.75 |
| CDY07696 | Canola | cytosol | 24.9 | 20.51 |
| CDX93300 | Canola | cytosol | 23.74 | 20.33 |
| CDY18366 | Canola | cytosol | 23.74 | 20.33 |
| CDY35924 | Canola | nucleus | 23.35 | 20.0 |
| CDX94877 | Canola | cytosol | 26.85 | 19.88 |
| CDY29750 | Canola | nucleus, plastid | 27.24 | 19.77 |
| CDY28060 | Canola | cytosol, nucleus, plastid | 22.96 | 19.67 |
| CDY14428 | Canola | cytosol | 23.74 | 19.61 |
| CDX81975 | Canola | nucleus | 22.57 | 19.59 |
| CDX92970 | Canola | cytosol | 25.29 | 19.52 |
| CDY52283 | Canola | nucleus | 21.4 | 19.5 |
| CDY53353 | Canola | mitochondrion | 22.18 | 19.45 |
| CDY30048 | Canola | mitochondrion | 22.18 | 19.32 |
| CDY13861 | Canola | nucleus | 22.18 | 19.26 |
| CDY31947 | Canola | nucleus | 22.18 | 19.19 |
| CDY05782 | Canola | nucleus | 22.18 | 19.19 |
| CDY16266 | Canola | nucleus | 26.46 | 19.05 |
| CDY07644 | Canola | cytosol | 22.18 | 18.94 |
| CDY10330 | Canola | cytosol | 26.85 | 18.85 |
| CDY15101 | Canola | nucleus | 20.23 | 18.7 |
| CDY10329 | Canola | plastid | 26.85 | 18.25 |
| CDY24955 | Canola | cytosol | 21.4 | 18.21 |
| CDX92863 | Canola | nucleus | 19.84 | 17.29 |
| CDY49659 | Canola | nucleus | 19.84 | 17.06 |
| CDY29898 | Canola | nucleus | 19.46 | 16.95 |
| CDY18979 | Canola | nucleus | 19.07 | 16.39 |
Protein Annotations
| EnsemblPlants:CDX88346 | EnsemblPlantsGene:GSBRNA2T00147865001 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF14 | PFAM:PF04720 |
| ProteinID:CDX88346 | ProteinID:CDX88346.1 | SEG:seg | TIGRFAMs:TIGR01615 | UniParc:UPI0004EE3E4E | MapMan:35.2 |
Description
BnaC06g37900D
Coordinates
chrLK031855:-:477319..478334
Molecular Weight (calculated)
29705.8 Da
IEP (calculated)
9.148
GRAVY (calculated)
-0.574
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLGEEDLE KLVIDYIESP IIASDELEKP SRVLITLQDV LGAKGEKEKE IEEKIKSFIR RRKLSYKGDD EKKDVMKRIV YKLRSDGYDA FISRTSWDSS
101: FDRLEGCRVF RCTRKYEFID VMVASDRDGD DVNKLRRVII DLDFKSQFEL VKQTRCYKDV TEILPTIFVA SEVRLKRVVS LVCNEMKKSM KEEGMSRPPW
201: RSKRYMQAKW LSENRLRVSG SKKGSWSLFD DGQGGEDVGT TSRGGIGLKT KCCFPIF
101: FDRLEGCRVF RCTRKYEFID VMVASDRDGD DVNKLRRVII DLDFKSQFEL VKQTRCYKDV TEILPTIFVA SEVRLKRVVS LVCNEMKKSM KEEGMSRPPW
201: RSKRYMQAKW LSENRLRVSG SKKGSWSLFD DGQGGEDVGT TSRGGIGLKT KCCFPIF
001: MGSLGEEDLE KLVLDYIESP ITVSQHIESS TTALITLKEI LRAKGEKEKE MEEKIWSFIN GGRLSYEGDD EKRDVMNKIV SKLRSEGYDA SLSKTSWDSS
101: FDHREGCRVF RCSRKYEYID VMVKGDSNRD GVSKLKRVII DLDFKTQFEL ARQTEAYKDM TEMLPLVFVA TEGRLRRVVS LVCGEMKKSM KKEGMSRPPW
201: RTTRYMQSKW LPENRRRVSG CKKGSWSWSV FDDGSEGRGE ARTWTVSGSG PKTKCCFPIF
101: FDHREGCRVF RCSRKYEYID VMVKGDSNRD GVSKLKRVII DLDFKTQFEL ARQTEAYKDM TEMLPLVFVA TEGRLRRVVS LVCGEMKKSM KKEGMSRPPW
201: RTTRYMQSKW LPENRRRVSG CKKGSWSWSV FDDGSEGRGE ARTWTVSGSG PKTKCCFPIF
Arabidopsis Description
T14N5.3 protein [Source:UniProtKB/TrEMBL;Acc:O80651]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.