Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G409700.1 | Wheat | cytosol | 94.31 | 95.87 |
| TraesCS3B01G442800.1 | Wheat | cytosol | 91.46 | 93.75 |
| HORVU3Hr1G091440.2 | Barley | cytosol | 88.21 | 89.3 |
| Zm00001d042631_P001 | Maize | cytosol | 52.44 | 60.56 |
| Os01t0879600-00 | Rice | plastid | 68.7 | 55.96 |
| OQU87982 | Sorghum | cytosol | 60.98 | 53.38 |
| GSMUA_Achr7P03040_001 | Banana | nucleus | 47.56 | 45.17 |
| PGSC0003DMT400079089 | Potato | cytosol | 26.42 | 42.76 |
| Solyc06g054640.1.1 | Tomato | cytosol | 30.08 | 33.33 |
| KRH43403 | Soybean | cytosol | 35.77 | 33.21 |
| VIT_04s0044g00970.t01 | Wine grape | cytosol | 36.18 | 32.84 |
| KRH59552 | Soybean | cytosol | 34.15 | 30.88 |
| VIT_18s0001g15610.t01 | Wine grape | cytosol | 33.33 | 29.71 |
| CDX87538 | Canola | nucleus | 28.86 | 27.63 |
| Bra015689.1-P | Field mustard | nucleus | 28.86 | 27.63 |
| CDX88346 | Canola | nucleus | 28.46 | 27.24 |
| AT1G77145.1 | Thale cress | cytosol | 27.24 | 25.77 |
| CDX87539 | Canola | nucleus | 28.05 | 25.75 |
| Bra015690.1-P | Field mustard | nucleus | 28.05 | 25.75 |
| AT1G77160.1 | Thale cress | cytosol | 26.83 | 25.1 |
| CDX88344 | Canola | cytosol | 26.02 | 24.15 |
| CDX88345 | Canola | nucleus | 26.02 | 23.88 |
| Bra015691.1-P | Field mustard | cytosol | 25.2 | 23.57 |
| CDX87540 | Canola | cytosol | 25.2 | 23.57 |
| TraesCS4D01G277000.1 | Wheat | peroxisome, plastid | 29.27 | 23.15 |
| TraesCS1D01G341700.1 | Wheat | cytosol | 26.42 | 22.41 |
| TraesCS3D01G273300.1 | Wheat | nucleus | 24.8 | 22.02 |
| TraesCS3D01G416400.1 | Wheat | cytosol | 25.2 | 21.23 |
| TraesCS4D01G188800.1 | Wheat | mitochondrion | 25.61 | 21.07 |
| TraesCS6D01G263600.1 | Wheat | cytosol | 25.2 | 19.38 |
| TraesCS5D01G446400.1 | Wheat | plastid | 29.27 | 18.9 |
| TraesCS3D01G536200.1 | Wheat | plastid | 23.58 | 16.76 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G404300.1 | EnsemblPlantsGene:TraesCS3D01G404300 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF14 | PFAM:PF04720 |
| SEG:seg | TIGRFAMs:TIGR01615 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr3D:+:518591052..518592651
Molecular Weight (calculated)
27112.9 Da
IEP (calculated)
7.643
GRAVY (calculated)
-0.581
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSSDERMF EMDSERASPT ESAPTQHQTT CHIIEGVLGG CTPLEMEIYE RAVEHVREMG EERKRSSLKK RLMVRLRKDG YDASLCRSSW VATAQHPGGD
101: HEYIDVHVAG DGGAGRTRLI VDIDFRSQFQ LARPAPWYAH LSARLPAVFV GPPDRLRKAV ALLCLASRRS LRESGLHVPP WRRSSYMQAK WFPSPAALPD
201: GDGDGDGAVA QHQQSQWSVA KPGAAGSRRS GLSMEMDGQD GASWAQ
101: HEYIDVHVAG DGGAGRTRLI VDIDFRSQFQ LARPAPWYAH LSARLPAVFV GPPDRLRKAV ALLCLASRRS LRESGLHVPP WRRSSYMQAK WFPSPAALPD
201: GDGDGDGAVA QHQQSQWSVA KPGAAGSRRS GLSMEMDGQD GASWAQ
001: MVEIQGRFKR IESAFNVAAA RVHPPCDNSS GSDHSPDLSD LVASFIEKEG QIVLREEEET SSDDNNLEDV NERLRKLLEG LSCGEERMRI LSATMEVAGT
101: FVGDISSSKR HLMAFLRNKG FDAGLCKSSW ERFGKNTGGK YEYVDVRCGG DYNNRYFVET NLAGEFEIAR PTKRYLSILS QVPRVFVGTS EELKLLVRIM
201: CHEMRRSMKH VGIHVPPWRR NGYMQAKWFG FYKRTSTTNN YEMVNTYDTT AFKGCKEEFW EAKGLKVMVG QLSIAFNISA VEV
101: FVGDISSSKR HLMAFLRNKG FDAGLCKSSW ERFGKNTGGK YEYVDVRCGG DYNNRYFVET NLAGEFEIAR PTKRYLSILS QVPRVFVGTS EELKLLVRIM
201: CHEMRRSMKH VGIHVPPWRR NGYMQAKWFG FYKRTSTTNN YEMVNTYDTT AFKGCKEEFW EAKGLKVMVG QLSIAFNISA VEV
Arabidopsis Description
DUF506 family protein (DUF506) [Source:UniProtKB/TrEMBL;Acc:O48807]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.