Factsheet for Bra015690.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra018296.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77145.1	Bra000214.1-P	AT2G41090.1	17360592
AT1G77145.1	Bra000214.1-P	AT2G41100.1	17360592
AT1G77145.1	Bra018296.1-P	AT3G51920.1	17360592
AT1G77145.1	Bra033467.1-P	AT3G51920.1	17360592
AT1G77145.1	Bra039723.1-P	AT4G14640.1	17360592
AT1G77145.1	Bra002368.1-P	AT5G21274.1	17360592
AT1G77145.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87539	Canola	nucleus	100.0	100.0
Bra015691.1-P	Field mustard	cytosol	79.85	81.37
Bra015689.1-P	Field mustard	nucleus	72.01	75.1
AT1G77145.1	Thale cress	cytosol	67.91	70.0
AT1G77160.1	Thale cress	cytosol	64.55	65.78
PGSC0003DMT400079089	Potato	cytosol	20.9	36.84
Solyc06g054640.1.1	Tomato	cytosol	26.49	31.98
KRH59552	Soybean	cytosol	30.97	30.51
Bra040373.1-P	Field mustard	plastid	21.64	30.21
GSMUA_Achr7P03040_001	Banana	nucleus	29.1	30.12
KRH43403	Soybean	cytosol	29.48	29.81
VIT_18s0001g15610.t01	Wine grape	cytosol	29.48	28.62
TraesCS3D01G404300.1	Wheat	nucleus	25.75	28.05
HORVU3Hr1G091440.2	Barley	cytosol	25.37	27.98
TraesCS3A01G409700.1	Wheat	cytosol	25.0	27.69
TraesCS3B01G442800.1	Wheat	cytosol	24.63	27.5
VIT_04s0044g00970.t01	Wine grape	cytosol	26.87	26.57
Zm00001d042631_P001	Maize	cytosol	20.9	26.29
OQU87982	Sorghum	cytosol	25.75	24.56
Os01t0879600-00	Rice	plastid	25.0	22.19
Bra001897.1-P	Field mustard	cytosol	25.75	20.72
Bra013223.1-P	Field mustard	nucleus	21.27	20.21
Bra016797.1-P	Field mustard	cytosol	22.01	20.0
Bra029641.1-P	Field mustard	nucleus	22.01	19.67
Bra017099.1-P	Field mustard	cytosol	22.01	19.67
Bra036877.1-P	Field mustard	cytosol, plastid	25.75	19.49
Bra000098.1-P	Field mustard	cytosol	22.39	19.42
Bra019736.1-P	Field mustard	mitochondrion	20.9	19.11
Bra033896.1-P	Field mustard	cytosol	25.37	18.53
Bra000140.1-P	Field mustard	cytosol	20.52	18.21
Bra036492.1-P	Field mustard	nucleus	19.4	17.51
Bra031136.1-P	Field mustard	nucleus	19.03	17.35
Bra026262.1-P	Field mustard	nucleus	18.66	16.72
Bra024209.1-P	Field mustard	nucleus	17.54	15.93

Protein Annotations

EnsemblPlants:Bra015690.1	EnsemblPlants:Bra015690.1-P	EnsemblPlantsGene:Bra015690	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF14
PFAM:PF04720	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI0002541A95	UniProt:M4DGR5	MapMan:35.2

Description

AT1G77145 (E=1e-089) | unknown protein

Coordinates

chrA07:-:21338681..21339754

Molecular Weight (calculated)

30838.9 Da

IEP (calculated)

8.813

GRAVY (calculated)

-0.788

Length

268 amino acids

Sequence
(BLAST)

001: MGSLGEEDLE KLVIDYIESS IIVPGHMEKS STALVTLQEI LGSKGEKEKE MEEKVKSFIR RRKLSYEGDD EKRDVMKRIV SKFRSDGYNA SIYRTSWDSS
101: FDRRKGCSRM FRCTRKYEYI EVMVASEQDG DDGSKERLII DLDFKSQFEL VKQTEGYKDV TQMLPTVFVA TEERLKRVVS LVCGEMKESM KKEGMSRPPW
201: RTTRYMLAKW LPENRLTVSG SKKGSWSMFD DGEGGEAVKT TSGIGLKTTC GQSERVLKSQ TKKEREER

Best Arabidopsis Sequence Match ( AT1G77145.1 )
(BLAST)

001: MGSLGEEDLE KLVLDYIESP ITVSQHIESS TTALITLKEI LRAKGEKEKE MEEKIWSFIN GGRLSYEGDD EKRDVMNKIV SKLRSEGYDA SLSKTSWDSS
101: FDHREGCRVF RCSRKYEYID VMVKGDSNRD GVSKLKRVII DLDFKTQFEL ARQTEAYKDM TEMLPLVFVA TEGRLRRVVS LVCGEMKKSM KKEGMSRPPW
201: RTTRYMQSKW LPENRRRVSG CKKGSWSWSV FDDGSEGRGE ARTWTVSGSG PKTKCCFPIF

Arabidopsis Description

T14N5.3 protein [Source:UniProtKB/TrEMBL;Acc:O80651]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.