Factsheet for Bra016797.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21027	Canola	cytosol	97.63	97.63
CDY31234	Canola	cytosol	94.92	95.24
Bra019736.1-P	Field mustard	mitochondrion	81.02	81.57
AT1G12030.1	Thale cress	mitochondrion	77.97	77.97
Solyc11g012120.1.1	Tomato	cytosol	40.68	40.4
KRH51155	Soybean	cytosol	40.34	40.07
KRH11519	Soybean	mitochondrion	42.37	40.06
KRH36535	Soybean	endoplasmic reticulum, golgi	43.05	37.8
VIT_12s0059g01640.t01	Wine grape	nucleus	37.29	36.54
Bra040373.1-P	Field mustard	plastid	22.03	33.85
EES07354	Sorghum	cytosol	31.53	30.1
GSMUA_Achr3P03980_001	Banana	cytosol	29.15	29.97
TraesCS6A01G283100.1	Wheat	cytosol	29.83	28.3
TraesCS6D01G263600.1	Wheat	cytosol	29.83	27.5
Bra013223.1-P	Field mustard	nucleus	26.1	27.3
Zm00001d051691_P001	Maize	cytosol	28.81	27.07
Bra029641.1-P	Field mustard	nucleus	27.46	27.0
Os02t0720400-00	Rice	nucleus	29.49	26.28
Bra015689.1-P	Field mustard	nucleus	21.02	24.12
Bra015691.1-P	Field mustard	cytosol	20.34	22.81
Bra017099.1-P	Field mustard	cytosol	23.05	22.67
Bra015690.1-P	Field mustard	nucleus	20.0	22.01
Bra000098.1-P	Field mustard	cytosol	22.71	21.68
Bra024209.1-P	Field mustard	nucleus	20.34	20.34
Bra000140.1-P	Field mustard	cytosol	20.68	20.2
Bra036492.1-P	Field mustard	nucleus	20.0	19.87
Bra001897.1-P	Field mustard	cytosol	22.37	19.82
Bra036877.1-P	Field mustard	cytosol, plastid	23.39	19.49
Bra031136.1-P	Field mustard	nucleus	18.98	19.05
Bra033896.1-P	Field mustard	cytosol	23.39	18.8
Bra026262.1-P	Field mustard	nucleus	18.98	18.73

Protein Annotations

EnsemblPlants:Bra016797.1	EnsemblPlants:Bra016797.1-P	EnsemblPlantsGene:Bra016797	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF15
PFAM:PF04720	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI000254621E	UniProt:M4DJW9	MapMan:35.2

Description

AT1G12030 (E=9e-112) | unknown protein

Coordinates

chrA08:+:20033880..20035821

Molecular Weight (calculated)

33606.0 Da

IEP (calculated)

7.783

GRAVY (calculated)

-0.544

Length

295 amino acids

Sequence
(BLAST)

001: MVEIPRRFNI LAAAFDVEAA RARPPCDSSS GSDHFPDETA DLWDLVESFM DSEVKALPED IPVEDKDDKS DVDDDYEDVK ERLREICENL GGGGERQRII
101: EEVVNASEIV GQKRLLMAYL RDKGFDAGLC KSKWERFGKN TAGKYEYVDV NRGDKNRFIV ETNLASEFEI AKPTTRYLSL LAQLPRVFVG TPEELKKFVR
201: IMCFEIRRSM KRAEIHVPPW RRNAYMQAKW FGHYKRTSNE VVTRVKSCGC GPRVGFEGLV KTATFNGYKE VERKRQGLKV GQLTVAFTGS GVRLS

Best Arabidopsis Sequence Match ( AT1G12030.1 )
(BLAST)

001: MVEIGGRFIR TAAAFDVAAA RARPPCASSS GSDHSPDDTE DLWDLVESFI DREVETLPED AFQEEEDDKS DEDYEDVKER LREILENHGG EERQRIMDEA
101: VNASRVFAGE KRHFMAYLRN KGFDAGLCKS RWEKFGKNTA GKYEYVDVKA GDKNRYIVET NLAGEFEIAR PTTRYLSVLA QVPRVFVGTP EELKQLVRIM
201: CFEIRRSMKR ADIFVPPWRR NGYMQAKWFG HYKRTSNEVV SRVKSCGCGP RVGFEESVKM TTFNGFKDGE MRRSGLKVGQ LTVAFNGSEV GLQIF

Arabidopsis Description

At1g12030 [Source:UniProtKB/TrEMBL;Acc:O65376]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.