Factsheet for Bra033896.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012779.1-P
Bra033495.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22970.1	Bra012779.1-P	AT4G15560.1	24104567
AT3G22970.1	Bra033495.1-P	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10330	Canola	cytosol	95.37	95.63
CDY10329	Canola	plastid	89.92	87.3
Bra001897.1-P	Field mustard	cytosol	75.2	82.88
AT3G22970.1	Thale cress	plastid	77.93	77.3
Bra036877.1-P	Field mustard	cytosol, plastid	66.76	69.21
VIT_05s0020g04500.t01	Wine grape	nucleus	60.49	57.51
KRH34359	Soybean	plastid	59.95	56.85
KRG92439	Soybean	plastid	60.22	56.23
KRH69065	Soybean	cytosol	53.13	53.28
PGSC0003DMT400041951	Potato	cytosol	52.59	52.16
KRH31637	Soybean	cytosol	53.68	51.44
GSMUA_Achr3P15230_001	Banana	cytosol	46.59	50.74
PGSC0003DMT400015576	Potato	cytosol, plastid	54.5	50.51
Solyc09g082980.2.1	Tomato	nucleus	54.77	50.5
Bra017099.1-P	Field mustard	cytosol	40.6	49.67
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	48.23	49.3
Solyc06g053910.2.1	Tomato	cytosol, plastid	52.04	49.1
Bra000098.1-P	Field mustard	cytosol	41.14	48.87
GSMUA_Achr8P26930_001	Banana	cytosol	45.5	47.31
GSMUA_Achr4P14880_001	Banana	mitochondrion	33.24	46.21
GSMUA_Achr8P04470_001	Banana	cytosol	45.78	45.65
GSMUA_Achr8P20590_001	Banana	plastid	44.14	44.63
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	46.32	44.5
Zm00001d032955_P001	Maize	cytosol, mitochondrion, nucleus, plastid	34.6	42.33
EER95459	Sorghum	plastid	34.33	42.14
EER91615	Sorghum	mitochondrion	33.52	41.98
Os03t0162500-01	Rice	plastid	34.88	41.69
TraesCS4B01G278500.1	Wheat	peroxisome, plastid	35.15	41.48
TraesCS4D01G277000.1	Wheat	peroxisome, plastid	34.88	41.16
TraesCS4A01G025500.1	Wheat	peroxisome, plastid	35.15	40.95
Os10t0417800-01	Rice	plastid	33.52	40.86
Zm00001d027763_P001	Maize	plastid	33.24	40.67
HORVU4Hr1G073730.1	Barley	peroxisome, plastid	34.88	40.63
GSMUA_Achr9P25590_001	Banana	plastid	44.14	39.8
TraesCS5B01G442200.1	Wheat	plastid	37.87	37.07
TraesCS5A01G439200.1	Wheat	plastid	37.87	37.07
Zm00001d018962_P001	Maize	mitochondrion, plastid	37.6	36.03
TraesCS5D01G446400.1	Wheat	plastid	37.33	35.96
EER93295	Sorghum	plastid	37.87	35.37
Bra040373.1-P	Field mustard	plastid	18.26	34.9
Os03t0796600-01	Rice	cytosol, nucleus, plastid	38.15	34.57
Zm00001d034444_P002	Maize	plastid	37.87	34.32
HORVU5Hr1G105950.2	Barley	plastid	37.33	33.66
Zm00001d007820_P002	Maize	plastid	35.97	32.92
Bra029641.1-P	Field mustard	nucleus	23.98	29.33
EER98072	Sorghum	cytosol, plastid	37.06	28.69
Bra013223.1-P	Field mustard	nucleus	21.53	28.01
Bra000140.1-P	Field mustard	cytosol	21.53	26.16
Bra015690.1-P	Field mustard	nucleus	18.53	25.37
Bra015689.1-P	Field mustard	nucleus	17.44	24.9
Bra015691.1-P	Field mustard	cytosol	17.71	24.71
Bra019736.1-P	Field mustard	mitochondrion	19.62	24.57
Bra016797.1-P	Field mustard	cytosol	18.8	23.39
Bra031136.1-P	Field mustard	nucleus	17.44	21.77
Bra036492.1-P	Field mustard	nucleus	16.62	20.54
Bra024209.1-P	Field mustard	nucleus	15.8	19.66
Bra026262.1-P	Field mustard	nucleus	15.8	19.4

Protein Annotations

EnsemblPlants:Bra033896.1	EnsemblPlants:Bra033896.1-P	EnsemblPlantsGene:Bra033896	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF19
PFAM:PF04720	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI0002547347	UniProt:M4EYK4	MapMan:35.2

Description

AT3G22970 (E=4e-129) | unknown protein

Coordinates

chrA05:-:14926740..14927979

Molecular Weight (calculated)

40570.0 Da

IEP (calculated)

5.119

GRAVY (calculated)

-0.399

Length

367 amino acids

Sequence
(BLAST)

001: MPFMMKIQPI DIDSPAVRET AARPVLKSRL KRLFDRPFTN VLRNATSEKP SHGGEVQCGG GAAVTEFEPS SVCLAKMVQN FIEETNEKQA KCGRNRCNCF
101: NGNNDDSSSD DDFDLFGGST ESFIGDASDH IKSLVTCVSL AERNLLADAA KIVDKNRSVK RKEDLRKLLN EGLLSLHYDS SLCKSKWEKS PSFPAGEYEY
201: IDVIVGEERL LIDVDFRSEF DIARQTSGYK ALLQSLPFIF VGKSDRLTQI VSLISEAAKQ SLKKRGMHLP PWRKAEYMRS KWMSSYTRAS VVASGNAEEP
301: PATVAAAEPE LDDCAELELV FEEKSLSPGV INSSSSPFPS VYGGDDDVAV EREVKVTGLA SLFKERP

Best Arabidopsis Sequence Match ( AT3G22970.1 )
(BLAST)

001: MPFTMKIQPI DIDSSPTVAR AESGNKPVLK SRLKRLFDRP FTNVLRNSTT TTTEKPFVVT GGEVQCGGVV TEFEPSSVCL AKMVQNFIEE NNEKQAKCGR
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP

Arabidopsis Description

At3g22970 [Source:UniProtKB/TrEMBL;Acc:Q9LIJ8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.