Factsheet for Solyc09g082980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g067890.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22970.1	Solyc01g067890.2.1	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015576	Potato	cytosol, plastid	95.98	96.46
Solyc06g053910.2.1	Tomato	cytosol, plastid	66.33	67.87
VIT_05s0020g04500.t01	Wine grape	nucleus	60.3	62.18
KRH34359	Soybean	plastid	60.3	62.02
KRG92439	Soybean	plastid	59.05	59.8
Bra001897.1-P	Field mustard	cytosol	47.99	57.36
CDX92970	Canola	cytosol	47.99	57.36
AT3G22970.1	Thale cress	plastid	53.27	57.3
Bra036877.1-P	Field mustard	cytosol, plastid	50.5	56.78
CDY29750	Canola	nucleus, plastid	50.5	56.78
CDX94877	Canola	cytosol	49.25	56.48
CDY16266	Canola	nucleus	50.25	56.02
Bra033896.1-P	Field mustard	cytosol	50.5	54.77
CDY10330	Canola	cytosol	49.5	53.83
KRH69065	Soybean	cytosol	49.5	53.83
AT4G14620.1	Thale cress	cytosol	45.73	53.37
GSMUA_Achr3P15230_001	Banana	cytosol	44.72	52.82
KRH31637	Soybean	cytosol	50.25	52.22
GSMUA_Achr8P26930_001	Banana	cytosol	44.72	50.42
GSMUA_Achr8P20590_001	Banana	plastid	45.73	50.14
CDY10329	Canola	plastid	47.24	49.74
GSMUA_Achr8P04470_001	Banana	cytosol	45.23	48.91
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	43.97	48.75
GSMUA_Achr4P14880_001	Banana	mitochondrion	31.16	46.97
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	43.47	45.29
Zm00001d032955_P001	Maize	cytosol, mitochondrion, nucleus, plastid	32.66	43.33
EER91615	Sorghum	mitochondrion	31.41	42.66
TraesCS5B01G442200.1	Wheat	plastid	39.7	42.13
EER95459	Sorghum	plastid	31.41	41.81
Solyc09g065760.2.1	Tomato	cytosol, plastid	45.48	41.61
TraesCS5A01G439200.1	Wheat	plastid	39.2	41.6
TraesCS4D01G277000.1	Wheat	peroxisome, plastid	32.41	41.48
TraesCS4B01G278500.1	Wheat	peroxisome, plastid	32.41	41.48
GSMUA_Achr9P25590_001	Banana	plastid	42.21	41.28
HORVU4Hr1G073730.1	Barley	peroxisome, plastid	32.66	41.27
Os03t0162500-01	Rice	plastid	31.66	41.04
Zm00001d027763_P001	Maize	plastid	30.9	41.0
TraesCS5D01G446400.1	Wheat	plastid	39.2	40.94
TraesCS4A01G025500.1	Wheat	peroxisome, plastid	32.16	40.63
Os10t0417800-01	Rice	plastid	30.4	40.2
EER93295	Sorghum	plastid	38.44	38.93
Zm00001d034444_P002	Maize	plastid	39.2	38.52
Zm00001d018962_P001	Maize	mitochondrion, plastid	36.93	38.38
HORVU5Hr1G105950.2	Barley	plastid	39.2	38.33
Os03t0796600-01	Rice	cytosol, nucleus, plastid	38.19	37.53
Zm00001d007820_P002	Maize	plastid	36.18	35.91
Solyc06g054640.1.1	Tomato	cytosol	19.35	34.68
EER98072	Sorghum	cytosol, plastid	35.93	30.17
Solyc06g083160.1.1	Tomato	nucleus	20.85	28.33
Solyc11g012120.1.1	Tomato	cytosol	19.85	26.6
Solyc06g007580.1.1	Tomato	nucleus	19.85	26.42
Solyc06g005480.2.1	Tomato	cytosol	19.85	25.32
Solyc02g078160.2.1	Tomato	nucleus	19.1	25.17
Solyc03g006410.2.1	Tomato	cytosol	18.59	24.34
Solyc02g078150.2.1	Tomato	nucleus	17.84	23.05
Solyc09g057760.2.1	Tomato	nucleus	12.31	22.69
Solyc11g042630.1.1	Tomato	cytosol	15.58	21.83
Solyc07g053900.2.1	Tomato	cytosol	15.58	19.38

Protein Annotations

EnsemblPlants:Solyc09g082980.2.1	EnsemblPlantsGene:Solyc09g082980.2	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF19	PFAM:PF04720
SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI000276C527	UniProt:K4CVS4	MapMan:35.2	:

Description

No Description!

Coordinates

chr9:+:68674039..68675795

Molecular Weight (calculated)

44112.4 Da

IEP (calculated)

6.764

GRAVY (calculated)

-0.494

Length

398 amino acids

Sequence
(BLAST)

001: MPPTKIQPID SLLDRESIQS DTTKPVLKSR IKRFFDRPFP SVLRISSGTE KPNAAGASNE LANGKDGAVP EFEPSSLCLA KMVQNFIEEN NEKPSPAKCG
101: RNRCNCFNGT NNDSSDDEFD FADSAHSSFN DSSDALKSLI PCATVVERNL LADISQIVEK NKACKSKNDL RKIVTDELLK LGYNASICKS KWEKAPSVPA
201: GEYEYIDVIE KGERVLIDVD FRSEFEVARS TSSYKAVLQL LPFIFVGNSD RLLQIVSIAS EAARQSLKKK GMHIAPWRKA EYIKAKWLSP HIRTGEATVK
301: SEVKEKKLVE EVESKQLSDS EFGELELIFG GQSSYDSNSF TLLSSSSPPP VKFSGSEEEK PVQPVMMTWE PPALKPKNCE RGNKVIVPGL ASLLREKP

Best Arabidopsis Sequence Match ( AT3G22970.1 )
(BLAST)

001: MPFTMKIQPI DIDSSPTVAR AESGNKPVLK SRLKRLFDRP FTNVLRNSTT TTTEKPFVVT GGEVQCGGVV TEFEPSSVCL AKMVQNFIEE NNEKQAKCGR
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP

Arabidopsis Description

At3g22970 [Source:UniProtKB/TrEMBL;Acc:Q9LIJ8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.