Factsheet for GSMUA_Achr9P10660_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P24940_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22970.1	GSMUA_Achr10P...	AT4G15560.1	24104567
AT3G22970.1	GSMUA_Achr3P24940_001	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P20590_001	Banana	plastid	75.39	79.34
GSMUA_Achr9P25590_001	Banana	plastid	74.08	69.53
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	63.61	67.69
GSMUA_Achr3P15230_001	Banana	cytosol	50.26	56.97
GSMUA_Achr4P14880_001	Banana	mitochondrion	38.74	56.06
Os03t0162500-01	Rice	plastid	43.72	54.4
EER95459	Sorghum	plastid	42.41	54.18
Zm00001d027763_P001	Maize	plastid	42.41	54.0
EER91615	Sorghum	mitochondrion	41.36	53.92
Zm00001d032955_P001	Maize	cytosol, mitochondrion, nucleus, plastid	42.15	53.67
GSMUA_Achr8P26930_001	Banana	cytosol	49.48	53.54
Os10t0417800-01	Rice	plastid	41.1	52.16
TraesCS4B01G278500.1	Wheat	peroxisome, plastid	42.41	52.09
TraesCS4D01G277000.1	Wheat	peroxisome, plastid	42.41	52.09
HORVU4Hr1G073730.1	Barley	peroxisome, plastid	42.93	52.06
TraesCS4A01G025500.1	Wheat	peroxisome, plastid	42.93	52.06
GSMUA_Achr8P04470_001	Banana	cytosol	49.48	51.36
TraesCS5B01G442200.1	Wheat	plastid	49.74	50.67
TraesCS5A01G439200.1	Wheat	plastid	49.21	50.13
KRH32089	Soybean	cytosol	44.24	49.85
KRH71351	Soybean	cytosol	46.6	49.58
TraesCS5D01G446400.1	Wheat	plastid	49.21	49.34
CDX92970	Canola	cytosol	41.88	48.05
Bra001897.1-P	Field mustard	cytosol	41.88	48.05
Zm00001d018962_P001	Maize	mitochondrion, plastid	48.17	48.04
VIT_05s0020g04500.t01	Wine grape	nucleus	48.43	47.93
CDY18366	Canola	cytosol	37.43	47.67
Os03t0796600-01	Rice	cytosol, nucleus, plastid	50.26	47.41
Bra017099.1-P	Field mustard	cytosol	37.17	47.33
CDX93300	Canola	cytosol	36.91	47.0
AT2G38820.2	Thale cress	cytosol	37.96	46.77
CDY07696	Canola	cytosol	37.96	46.47
CDY29750	Canola	nucleus, plastid	42.93	46.33
Bra033896.1-P	Field mustard	cytosol	44.5	46.32
KRH34359	Soybean	plastid	46.86	46.25
CDY16266	Canola	nucleus	43.19	46.22
KRG92439	Soybean	plastid	47.38	46.06
Bra036877.1-P	Field mustard	cytosol, plastid	42.67	46.05
Bra000098.1-P	Field mustard	cytosol	37.17	45.95
PGSC0003DMT400041951	Potato	cytosol	44.5	45.95
VIT_00s0179g00360.t01	Wine grape	cytosol	47.64	45.84
KRG95606	Soybean	cytosol	43.19	45.71
CDY14428	Canola	cytosol	37.17	45.66
EER93295	Sorghum	plastid	46.86	45.55
HORVU5Hr1G105950.2	Barley	plastid	48.43	45.45
CDX94877	Canola	cytosol	40.84	44.96
CDY10330	Canola	cytosol	42.93	44.81
PGSC0003DMT400015576	Potato	cytosol, plastid	46.34	44.7
Zm00001d034444_P002	Maize	plastid	47.12	44.44
AT3G22970.1	Thale cress	plastid	42.93	44.32
Zm00001d007820_P002	Maize	plastid	46.34	44.14
AT4G14620.1	Thale cress	cytosol	39.27	43.99
Solyc09g082980.2.1	Tomato	nucleus	45.29	43.47
Solyc06g053910.2.1	Tomato	cytosol, plastid	43.46	42.67
KRH69065	Soybean	cytosol	40.31	42.08
KRH31637	Soybean	cytosol	42.15	42.04
CDY10329	Canola	plastid	41.36	41.8
AT3G54550.1	Thale cress	plastid	30.63	40.62
PGSC0003DMT400049773	Potato	nucleus	42.41	37.33
Solyc09g065760.2.1	Tomato	cytosol, plastid	41.88	36.78
EER98072	Sorghum	cytosol, plastid	45.29	36.5
GSMUA_Achr6P21070_001	Banana	cytosol	23.82	30.54
GSMUA_Achr7P03040_001	Banana	nucleus	19.63	28.96
GSMUA_Achr7P24960_001	Banana	cytosol	20.16	28.1
GSMUA_Achr4P02600_001	Banana	nucleus	19.63	26.98
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	14.66	26.92
GSMUA_Achr3P31780_001	Banana	cytosol	20.16	26.83
GSMUA_Achr3P03980_001	Banana	cytosol	19.63	26.13
GSMUA_Achr10P...	Banana	mitochondrion	23.04	25.29
GSMUA_Achr5P07100_001	Banana	cytosol	24.08	17.8

Protein Annotations

EnsemblPlants:GSMUA_Achr9P10660_001	EnsemblPlants:GSMUA_Achr9T10660_001	EnsemblPlantsGene:GSMUA_Achr9G10660_001	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF19
PFAM:PF04720	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI0002965D01	UniProt:M0TZ75	MapMan:35.2

Description

plant-specific domain TIGR01615 family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G10660_001]

Coordinates

chr9:+:6951671..6952989

Molecular Weight (calculated)

41472.7 Da

IEP (calculated)

7.092

GRAVY (calculated)

-0.489

Length

382 amino acids

Sequence
(BLAST)

001: MLFQMKIQPV DASGSVAFAP RSDPGKPAAK SRLKRLFERQ FPSVLRNPAA EKVAGAGDCR EKERDDGGGD VEPSSVFLDT MVFSFTEEGH HDKPPRGRCN
101: CFNANFDDSS DDDFDARDGD APGSAAAPGD AAEAIKGLVL CASMAERNLL ADASKILEKA KNSKNKGDWR RMVADGLRSL GYDVAVCRSR WDQSPSFPAG
201: EHEYIDVVVE GGDRLLVDVD FRSEFEVARP TKSYRAVLQH LPSVFVGRSD RLQQIVALAS EAARQSLKKK GLHVPPWRRP EYMKAKWLSP YHRTTATEVT
301: EESVSRGAQS GRGSSNNTIP CSISAIDFSG VSEQSTNAAG TGDDIPDAAA RERMEVVVSP WRPPPVRPKA GVKVVTGLAL VL

Best Arabidopsis Sequence Match ( AT3G22970.2 )
(BLAST)

001: MVLPMMNQIY SVVQSTVATL LIISSLIPCT TVGERNLLAD AAKIVDKNKS VKRKDDMKKI VNEGLLSLNY NSSICKSKWD KSPSFPAGEY EYIDVIIGEE
101: RLIIDVDFRS EFDIARQTSG YKVLLQSLPF IFVGKSDRLS QIVFLISEAA KQSLKKKGMP FPPWRKAEYM RSKWLSSYTR ASVVVVDETV TVTDVTAADA
201: AVEKEVDSVE IELVFEEKCL SPRVIVNSSS SPTDGDDDVA VEREVKAVTG LASLFKEKP

Arabidopsis Description

At3g22970 [Source:UniProtKB/TrEMBL;Acc:Q9LIJ8]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.