Factsheet for GSMUA_Achr3P24940_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P14430_001
GSMUA_Achr3P15230_001
GSMUA_Achr3P24940_001
GSMUA_Achr3P26310_001
GSMUA_Achr4P14880_001
GSMUA_Achr4P21100_001
GSMUA_Achr5P26210_001
GSMUA_Achr5P27100_001
GSMUA_Achr8P04470_001
GSMUA_Achr8P05620_001
GSMUA_Achr8P20590_001
GSMUA_Achr8P26930_001
GSMUA_Achr9P10660_001
GSMUA_Achr9P25590_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15560.1	GSMUA_Achr5P26210_001	AT1G08290.1	24104567
AT4G15560.1	GSMUA_Achr1P14430_001	AT2G26080.1	24104567
AT4G15560.1	GSMUA_Achr3P26310_001	AT2G26080.1	24104567
AT4G15560.1	GSMUA_Achr8P05620_001	AT2G26080.1	24104567
AT4G15560.1	GSMUA_Achr3P15230_001	AT3G22970.1	24104567
AT4G15560.1	GSMUA_Achr4P14880_001	AT3G22970.1	24104567
AT4G15560.1	GSMUA_Achr4P21100_001	AT3G22970.1	24104567
AT4G15560.1	GSMUA_Achr8P04470_001	AT3G22970.1	24104567
AT4G15560.1	GSMUA_Achr8P20590_001	AT3G22970.1	24104567
AT4G15560.1	GSMUA_Achr8P26930_001	AT3G22970.1	24104567
AT4G15560.1	GSMUA_Achr9P10660_001	AT3G22970.1	24104567
AT4G15560.1	GSMUA_Achr9P25590_001	AT3G22970.1	24104567
AT4G15560.1	GSMUA_Achr10P...	AT4G15560.1	21798944
AT4G15560.1	GSMUA_Achr3P24940_001	AT4G15560.1	21798944
AT4G15560.1	GSMUA_Achr5P27100_001	AT4G26780.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	77.67	91.5
Bra001832.1-P	Field mustard	peroxisome	70.45	85.28
VIT_05s0020g02130.t01	Wine grape	plastid	81.55	85.2
KRH20991	Soybean	plastid	80.61	83.63
Solyc01g067890.2.1	Tomato	plastid	80.21	83.45
PGSC0003DMT400058821	Potato	plastid	80.08	83.31
KRH02173	Soybean	plastid	79.28	83.29
Os05t0408900-03	Rice	plastid	79.81	82.92
TraesCS1D01G255100.1	Wheat	plastid	78.61	82.58
TraesCS1A01G255800.1	Wheat	plastid	78.48	82.44
TraesCS1B01G266500.1	Wheat	plastid	78.48	82.44
EES19518	Sorghum	mitochondrion, plastid	78.88	81.72
KRH50940	Soybean	plastid	79.95	81.58
AT4G15560.1	Thale cress	plastid	77.67	81.03
CDY64791	Canola	plastid	77.41	80.87
Bra033495.1-P	Field mustard	plastid	76.47	80.79
HORVU1Hr1G060610.9	Barley	mitochondrion, plastid	78.21	80.58
CDY09752	Canola	plastid	76.87	80.08
CDY32433	Canola	plastid	76.47	79.89
CDX90583	Canola	plastid	72.99	79.82
Bra012779.1-P	Field mustard	plastid	72.86	79.68
CDY48893	Canola	plastid	76.2	79.61
Zm00001d038170_P001	Maize	plastid	79.55	79.55
KRH11287	Soybean	peroxisome, plastid	45.32	78.47
AT3G21500.3	Thale cress	plastid	69.65	76.96
CDY52177	Canola	plastid	75.0	76.53
GSMUA_Achr4P17600_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	40.51	74.26
GSMUA_Achr5P15060_001	Banana	plastid	63.5	68.74
GSMUA_Achr5P24730_001	Banana	plastid	64.44	68.18
KRH16140	Soybean	mitochondrion, plastid	10.29	58.78
GSMUA_Achr5P06150_001	Banana	plastid	53.88	56.76
GSMUA_Achr4P17610_001	Banana	extracellular, nucleus	0.13	0.05

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	MapMan:9.1.2.2	InterPro:Dxylulose-5-P_synthase	GO:GO:0003674
GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008661	GO:GO:0009058
GO:GO:0009987	GO:GO:0016114	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr3G24940_001	EnsemblPlants:GSMUA_Achr3P24940_001	EnsemblPlants:GSMUA_Achr3T24940_001
InterPro:IPR009014	UniProt:M0SHL0	HAMAP:MF_00315	PFAM:PF02779	PFAM:PF02780	PFAM:PF13292
ScanProsite:PS00801	ScanProsite:PS00802	PANTHER:PTHR43322	PANTHER:PTHR43322:SF4	SMART:SM00861	SUPFAM:SSF52518
SUPFAM:SSF52922	InterPro:THDP-binding	TIGRFAMs:TIGR00204	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS
InterPro:Transketolase_C	InterPro:Transketolase_N	UniParc:UPI0002962979	SEG:seg	:	:

Description

Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr3G24940_001]

Coordinates

chr3:-:25317836..25322314

Molecular Weight (calculated)

80840.1 Da

IEP (calculated)

7.542

GRAVY (calculated)

-0.094

Length

748 amino acids

Sequence
(BLAST)

001: MAASTLPFSC HLPALLSSDL QKASPLLPTQ LFAGTDLPHH RHRHGFLTPR RRSCVCASLS GTGEYFSQRP PTPLLDTVNY PIHMKNLSVK ELKQLADELR
101: SDVIFHVSKT GGHLGSSLGV VELTVALHYV FNAPQDKILW DVGHQSYPHK ILTGRRDKMP TLRRTNGLSG FTKRSESDYD SFGTGHSSTS ISAALGMAVG
201: RDLKGRKNNV IAVIGDGAMT AGQAYEAMNN AGYLDSDMIV ILNDNKQVSL PTASLDGPIP PVGALSSALS RLQSSRPLRE LREVAKGVTK QIGGSMHQIA
301: AKVDEYARGM ISGSGSTLFE ELGLYYIGPV DGHNIDDLVS ILKEVKDTKT TGPVLIHVVT EKGRGYPYAE RAADKYHGVT KFDPATGKQL KSISQTQSYT
401: NYFAEALIAE AEVDKDIVAI HAAMGGGTGL NYFLRRFPTR CFDVGIAEQH AVTFAAGLAC EGLKPFCAIY SSFLQRAYDQ ASHCPHFSIL SFDKVKPTRS
501: SNDEFELLMQ VIHDVDLQKL PVRFAMDRAG LVGADGPTHC GAFDVTYMAC LPNMIVMAPS DEAELFHMVA TAAAINDRPS CFRYPRGNGI GVPLPQGNKG
601: VPLEIGKGRI LIEGERVALL GYGTAVQSCV AAASLLEQRG LRVTVADARF CKPLDHALIR NLSKSHQVLI TVEEGSIGGF GSHVAQFMAL NGLLDGTIKW
701: RPLVLPDRYI EHGSPNDQLA EAGLTPSHVA ATVLNILGQT REALEIMS

Best Arabidopsis Sequence Match ( AT4G15560.1 )
(BLAST)

001: MASSAFAFPS YIITKGGLST DSCKSTSLSS SRSLVTDLPS PCLKPNNNSH SNRRAKVCAS LAEKGEYYSN RPPTPLLDTI NYPIHMKNLS VKELKQLSDE
101: LRSDVIFNVS KTGGHLGSSL GVVELTVALH YIFNTPQDKI LWDVGHQSYP HKILTGRRGK MPTMRQTNGL SGFTKRGESE HDCFGTGHSS TTISAGLGMA
201: VGRDLKGKNN NVVAVIGDGA MTAGQAYEAM NNAGYLDSDM IVILNDNKQV SLPTATLDGP SPPVGALSSA LSRLQSNPAL RELREVAKGM TKQIGGPMHQ
301: LAAKVDEYAR GMISGTGSSL FEELGLYYIG PVDGHNIDDL VAILKEVKST RTTGPVLIHV VTEKGRGYPY AERADDKYHG VVKFDPATGR QFKTTNKTQS
401: YTTYFAEALV AEAEVDKDVV AIHAAMGGGT GLNLFQRRFP TRCFDVGIAE QHAVTFAAGL ACEGLKPFCA IYSSFMQRAY DQVVHDVDLQ KLPVRFAMDR
501: AGLVGADGPT HCGAFDVTFM ACLPNMIVMA PSDEADLFNM VATAVAIDDR PSCFRYPRGN GIGVALPPGN KGVPIEIGKG RILKEGERVA LLGYGSAVQS
601: CLGAAVMLEE RGLNVTVADA RFCKPLDRAL IRSLAKSHEV LITVEEGSIG GFGSHVVQFL ALDGLLDGKL KWRPMVLPDR YIDHGAPADQ LAEAGLMPSH
701: IAATALNLIG APREALF

Arabidopsis Description

DXSDXS1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.