Factsheet for Bra033495.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001897.1-P
Bra010427.1-P
Bra012779.1-P
Bra018638.1-P
Bra026403.1-P
Bra031621.1-P
Bra033495.1-P
Bra033896.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15560.1	Bra018638.1-P	AT1G08290.1	24104567
AT4G15560.1	Bra031621.1-P	AT1G08290.1	24104567
AT4G15560.1	Bra001897.1-P	AT3G22970.1	24104567
AT4G15560.1	Bra033896.1-P	AT3G22970.1	24104567
AT4G15560.1	Bra012779.1-P	AT4G15560.1	21798944
AT4G15560.1	Bra033495.1-P	AT4G15560.1	21798944
AT4G15560.1	Bra010427.1-P	AT4G26780.1	24104567
AT4G15560.1	Bra026403.1-P	AT4G26780.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64791	Canola	plastid	99.44	98.32
Bra012779.1-P	Field mustard	plastid	91.38	94.59
AT4G15560.1	Thale cress	plastid	91.81	90.66
CDY52177	Canola	plastid	93.5	90.31
Bra001832.1-P	Field mustard	peroxisome	77.82	89.16
GSMUA_Achr10P...	Banana	cytosol	77.26	86.14
Solyc01g067890.2.1	Tomato	plastid	83.05	81.78
PGSC0003DMT400058821	Potato	plastid	82.49	81.22
VIT_05s0020g02130.t01	Wine grape	plastid	82.06	81.15
KRH20991	Soybean	plastid	82.06	80.58
KRH02173	Soybean	plastid	80.93	80.48
Os05t0408900-03	Rice	plastid	80.23	78.89
KRH50940	Soybean	plastid	81.07	78.31
TraesCS1D01G255100.1	Wheat	plastid	78.67	78.23
TraesCS1A01G255800.1	Wheat	plastid	78.53	78.09
TraesCS1B01G266500.1	Wheat	plastid	78.39	77.95
EES19518	Sorghum	mitochondrion, plastid	79.1	77.56
GSMUA_Achr3P24940_001	Banana	plastid	80.79	76.47
HORVU1Hr1G060610.9	Barley	mitochondrion, plastid	78.39	76.45
KRH11287	Soybean	peroxisome, plastid	46.19	75.69
Zm00001d038170_P001	Maize	plastid	79.94	75.67
KRH16140	Soybean	mitochondrion, plastid	11.02	59.54
Bra008967.1-P	Field mustard	plastid	51.41	52.3

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:9.1.2.2	EnsemblPlantsGene:Bra033495
EnsemblPlants:Bra033495.1	EnsemblPlants:Bra033495.1-P	InterPro:Dxylulose-5-P_synthase	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0008661	GO:GO:0009058	GO:GO:0009987	GO:GO:0016114
GO:GO:0016740	InterPro:IPR009014	UniProt:M4EXF8	HAMAP:MF_00315	PFAM:PF02779	PFAM:PF02780
PFAM:PF13292	ScanProsite:PS00801	ScanProsite:PS00802	PANTHER:PTHR43322	PANTHER:PTHR43322:SF4	SMART:SM00861
SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	TIGRFAMs:TIGR00204	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd
InterPro:Transketolase_BS	InterPro:Transketolase_C	InterPro:Transketolase_N	UniParc:UPI0002544A9F	SEG:seg	:

Description

AT4G15560 (E=0.0) CLA1, DEF, CLA, DXS, DXPS2 | CLA1 (CLOROPLASTOS ALTERADOS 1); 1-deoxy-D-xylulose-5-phosphate synthase

Coordinates

chrA01:-:11590045..11593049

Molecular Weight (calculated)

75945.3 Da

IEP (calculated)

7.768

GRAVY (calculated)

-0.115

Length

708 amino acids

Sequence
(BLAST)

001: MALSAFAFPS YIIAKGVLTD SCKQTSLSSS RSLATDLPSP CRRPNNSHSN KKVKVNASLV EKGEYYSNRP PTPLLDTINY PIHMKNLSIK ELKQLSDELR
101: SDVIFNVSKT GGHLGSSLGV VELTVALHYI FNTPQDKILW DVGHQSYPHK ILTGRRGKMP TMRQTNGLSG FTKRGESEHD CFGTGHSSTT ISAGLGMAVG
201: RDLKGKSNNV VAVIGDGAMT AGQAYEAMNN AGYLDSDMIV ILNDNKQVSL PTATLDGPSP PVGALSSALS RLQSNPALRE LREGVTKQIG GPMHQLAAKV
301: DEYARGMISG TGSTLFEELG LYYIGPVDGH NIDDMVAILK EVKSARTTGP VLIHVVTEKG RGYPYAERAD DKYHGVVKFD PATGKQFKSS NKTQSYTTYF
401: AEALVAEAEV DKDVVAIHAA MGGGTGLNLF QRRFPTRCFD VGIAEQHAVT FAAGLACEGL KPFCAIYSSF MQRAYDQANL QKLPVRFAMD RAGLVGADGP
501: THCGAFDVTF MACLPNMIVM APSDEAELFN MVATASAIDD RPSCFRYPRG NGIGVALPPG NKGVPLEVGK GRILKEGERV ALLGYGSAVQ SCLGAAAMLQ
601: ERGLNITVAD ARFCKPLDRA LIRSLAKSHE VLITVEEGSI GGFGSHVVQF LALDGLLDGK LKWRPMVLPD RYIDHGSPAD QMAEAGLMPS HIAATALNLI
701: GAPWEALY

Best Arabidopsis Sequence Match ( AT4G15560.1 )
(BLAST)

001: MASSAFAFPS YIITKGGLST DSCKSTSLSS SRSLVTDLPS PCLKPNNNSH SNRRAKVCAS LAEKGEYYSN RPPTPLLDTI NYPIHMKNLS VKELKQLSDE
101: LRSDVIFNVS KTGGHLGSSL GVVELTVALH YIFNTPQDKI LWDVGHQSYP HKILTGRRGK MPTMRQTNGL SGFTKRGESE HDCFGTGHSS TTISAGLGMA
201: VGRDLKGKNN NVVAVIGDGA MTAGQAYEAM NNAGYLDSDM IVILNDNKQV SLPTATLDGP SPPVGALSSA LSRLQSNPAL RELREVAKGM TKQIGGPMHQ
301: LAAKVDEYAR GMISGTGSSL FEELGLYYIG PVDGHNIDDL VAILKEVKST RTTGPVLIHV VTEKGRGYPY AERADDKYHG VVKFDPATGR QFKTTNKTQS
401: YTTYFAEALV AEAEVDKDVV AIHAAMGGGT GLNLFQRRFP TRCFDVGIAE QHAVTFAAGL ACEGLKPFCA IYSSFMQRAY DQVVHDVDLQ KLPVRFAMDR
501: AGLVGADGPT HCGAFDVTFM ACLPNMIVMA PSDEADLFNM VATAVAIDDR PSCFRYPRGN GIGVALPPGN KGVPIEIGKG RILKEGERVA LLGYGSAVQS
601: CLGAAVMLEE RGLNVTVADA RFCKPLDRAL IRSLAKSHEV LITVEEGSIG GFGSHVVQFL ALDGLLDGKL KWRPMVLPDR YIDHGAPADQ LAEAGLMPSH
701: IAATALNLIG APREALF

Arabidopsis Description

DXSDXS1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.