Factsheet for Zm00001d038170_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005513_P001
Zm00001d007820_P002
Zm00001d010131_P001
Zm00001d018962_P001
Zm00001d023437_P001
Zm00001d027763_P001
Zm00001d032955_P001
Zm00001d034444_P002
Zm00001d038170_P001
Zm00001d038297_P001
Zm00001d042781_P001
Zm00001d050123_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15560.1	Zm00001d010131_P001	AT1G08290.1	24104567
AT4G15560.1	Zm00001d038297_P001	AT1G08290.1	24104567
AT4G15560.1	Zm00001d042781_P001	AT1G08290.1	24104567
AT4G15560.1	Zm00001d023437_P001	AT2G26080.1	24104567
AT4G15560.1	Zm00001d007820_P002	AT3G22970.1	24104567
AT4G15560.1	Zm00001d018962_P001	AT3G22970.1	24104567
AT4G15560.1	Zm00001d027763_P001	AT3G22970.1	24104567
AT4G15560.1	Zm00001d032955_P001	AT3G22970.1	24104567
AT4G15560.1	Zm00001d034444_P002	AT3G22970.1	24104567
AT4G15560.1	Zm00001d038170_P001	AT4G15560.1	21798944
AT4G15560.1	Zm00001d005513_P001	AT4G26780.1	24104567
AT4G15560.1	Zm00001d050123_P001	AT4G26780.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19518	Sorghum	mitochondrion, plastid	89.71	92.94
Os05t0408900-03	Rice	plastid	85.96	89.31
GSMUA_Achr10P...	Banana	cytosol	75.8	89.29
TraesCS1A01G255800.1	Wheat	plastid	84.09	88.34
TraesCS1D01G255100.1	Wheat	plastid	83.82	88.06
TraesCS1B01G266500.1	Wheat	plastid	83.82	88.06
HORVU1Hr1G060610.9	Barley	mitochondrion, plastid	82.75	85.26
Bra001832.1-P	Field mustard	peroxisome	69.52	84.14
VIT_05s0020g02130.t01	Wine grape	plastid	79.55	83.1
KRH02173	Soybean	plastid	79.01	83.01
Solyc01g067890.2.1	Tomato	plastid	79.55	82.75
PGSC0003DMT400058821	Potato	plastid	79.41	82.61
KRH20991	Soybean	plastid	79.41	82.39
KRH50940	Soybean	plastid	79.01	80.63
AT4G15560.1	Thale cress	plastid	77.14	80.47
CDX90583	Canola	plastid	73.4	80.26
CDY64791	Canola	plastid	76.74	80.17
Bra012779.1-P	Field mustard	plastid	73.13	79.97
Bra033495.1-P	Field mustard	plastid	75.67	79.94
CDY09752	Canola	plastid	76.6	79.81
GSMUA_Achr3P24940_001	Banana	plastid	79.55	79.55
CDY32433	Canola	plastid	75.27	78.63
CDY48893	Canola	plastid	75.13	78.49
KRH11287	Soybean	peroxisome, plastid	45.05	78.01
AT3G21500.3	Thale cress	plastid	68.85	76.07
CDY52177	Canola	plastid	73.66	75.17
Zm00001d019060_P001	Maize	plastid	68.32	70.29
KRH16140	Soybean	mitochondrion, plastid	10.29	58.78
Zm00001d045383_P006	Maize	peroxisome	51.2	51.0

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:9.1.2.2	UniProt:A0A1D6M458
ProteinID:AQK85915.1	InterPro:Dxylulose-5-P_synthase	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0008661	GO:GO:0009058	GO:GO:0009987	GO:GO:0016114	GO:GO:0016740
InterPro:IPR009014	HAMAP:MF_00315	PFAM:PF02779	PFAM:PF02780	PFAM:PF13292	ScanProsite:PS00801
ScanProsite:PS00802	PANTHER:PTHR43322	PANTHER:PTHR43322:SF4	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922
InterPro:THDP-binding	TIGRFAMs:TIGR00204	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS	InterPro:Transketolase_C
InterPro:Transketolase_N	UniParc:UPI000842BDE9	EnsemblPlantsGene:Zm00001d038170	EnsemblPlants:Zm00001d038170_P001	EnsemblPlants:Zm00001d038170_T001	SEG:seg

Description

deoxy xylulose synthase 1 deoxy xylulose synthase 1

Coordinates

chr6:-:150418144..150422431

Molecular Weight (calculated)

80303.5 Da

IEP (calculated)

7.654

GRAVY (calculated)

-0.049

Length

748 amino acids

Sequence
(BLAST)

001: MALSTFSVPR GFLGVPAQDS HFASAVELHV NKLLQARPIN LKPRRRPACV SASLSSEREA EYYSQRPPTP LLDTINYPVH MKNLSVKELR QLADELRSDV
101: IFHVSKTGGH LGSSLGVVEL TVALHYVFNA PQDRILWDVG HQSYPHKILT GRRDKMPTMR QTNGLAGFTK RAESEYDSFG TGHSSTTISA ALGMAVGRDL
201: KGGKNNVVAV IGDGAMTAGQ AYEAMNNAGY LDSDMIVILN DNKQVSLPTA TLDGPVPPVG ALSSALSKLQ SSRPLRELRE VAKVLTGPFL LGRQGLWKEW
301: AAQGVTKQIG GSVHELAAKV DEYARGMISG PGSSLFEELG LYYIGPVDGH NIDDLITILN DVKSTKTTGP VLIHVVTEKG RGYPYAERAA DKYHGVAKFD
401: PATGKQFKSP AKTLSYTNYF AEALIAEAEQ DSKIVAIHAA MGGGTGLNYF LRRFPSRCFD VGIAEQHAVT FAAGLACEGL KPFCAIYSSF LQRGYDQVVH
501: DVDLQKLPVR FAMDRAGLVG ADGPTHCGAF DVAYMACLPN MVVMAPSDEA ELCHMVATAA AIDDRPSCFR YPRGNGVGVP LPPNYKGTPL EVGKGRILLE
601: GDRVALLGYG SAVQYCLTAA SLVQRHGLKV TVADARFCKP LDHALIRSLA KSHEVLITVE EGSIGGFGSH VAQFMALDGL LDGKLKASLT LASCSWRPLV
701: LPDRYIDHGS PADQLAEAGL TPSHIAASVF NILGQNREAL AIMAVPNA

Best Arabidopsis Sequence Match ( AT4G15560.1 )
(BLAST)

001: MASSAFAFPS YIITKGGLST DSCKSTSLSS SRSLVTDLPS PCLKPNNNSH SNRRAKVCAS LAEKGEYYSN RPPTPLLDTI NYPIHMKNLS VKELKQLSDE
101: LRSDVIFNVS KTGGHLGSSL GVVELTVALH YIFNTPQDKI LWDVGHQSYP HKILTGRRGK MPTMRQTNGL SGFTKRGESE HDCFGTGHSS TTISAGLGMA
201: VGRDLKGKNN NVVAVIGDGA MTAGQAYEAM NNAGYLDSDM IVILNDNKQV SLPTATLDGP SPPVGALSSA LSRLQSNPAL RELREVAKGM TKQIGGPMHQ
301: LAAKVDEYAR GMISGTGSSL FEELGLYYIG PVDGHNIDDL VAILKEVKST RTTGPVLIHV VTEKGRGYPY AERADDKYHG VVKFDPATGR QFKTTNKTQS
401: YTTYFAEALV AEAEVDKDVV AIHAAMGGGT GLNLFQRRFP TRCFDVGIAE QHAVTFAAGL ACEGLKPFCA IYSSFMQRAY DQVVHDVDLQ KLPVRFAMDR
501: AGLVGADGPT HCGAFDVTFM ACLPNMIVMA PSDEADLFNM VATAVAIDDR PSCFRYPRGN GIGVALPPGN KGVPIEIGKG RILKEGERVA LLGYGSAVQS
601: CLGAAVMLEE RGLNVTVADA RFCKPLDRAL IRSLAKSHEV LITVEEGSIG GFGSHVVQFL ALDGLLDGKL KWRPMVLPDR YIDHGAPADQ LAEAGLMPSH
701: IAATALNLIG APREALF

Arabidopsis Description

DXSDXS1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.