Factsheet for GSMUA_Achr10P01400_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P14430_001
GSMUA_Achr3P15230_001
GSMUA_Achr3P24940_001
GSMUA_Achr3P26310_001
GSMUA_Achr4P14880_001
GSMUA_Achr4P21100_001
GSMUA_Achr5P26210_001
GSMUA_Achr5P27100_001
GSMUA_Achr8P04470_001
GSMUA_Achr8P05620_001
GSMUA_Achr8P20590_001
GSMUA_Achr8P26930_001
GSMUA_Achr9P10660_001
GSMUA_Achr9P25590_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15560.1	GSMUA_Achr5P26210_001	AT1G08290.1	24104567
AT4G15560.1	GSMUA_Achr1P14430_001	AT2G26080.1	24104567
AT4G15560.1	GSMUA_Achr3P26310_001	AT2G26080.1	24104567
AT4G15560.1	GSMUA_Achr8P05620_001	AT2G26080.1	24104567
AT4G15560.1	GSMUA_Achr3P15230_001	AT3G22970.1	24104567
AT4G15560.1	GSMUA_Achr4P14880_001	AT3G22970.1	24104567
AT4G15560.1	GSMUA_Achr4P21100_001	AT3G22970.1	24104567
AT4G15560.1	GSMUA_Achr8P04470_001	AT3G22970.1	24104567
AT4G15560.1	GSMUA_Achr8P20590_001	AT3G22970.1	24104567
AT4G15560.1	GSMUA_Achr8P26930_001	AT3G22970.1	24104567
AT4G15560.1	GSMUA_Achr9P10660_001	AT3G22970.1	24104567
AT4G15560.1	GSMUA_Achr9P25590_001	AT3G22970.1	24104567
AT4G15560.1	GSMUA_Achr10P...	AT4G15560.1	21798944
AT4G15560.1	GSMUA_Achr3P24940_001	AT4G15560.1	21798944
AT4G15560.1	GSMUA_Achr5P27100_001	AT4G26780.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001832.1-P	Field mustard	peroxisome	82.2	84.47
KRH02173	Soybean	plastid	89.29	79.63
VIT_05s0020g02130.t01	Wine grape	plastid	89.61	79.47
Os05t0408900-03	Rice	plastid	90.08	79.44
Solyc01g067890.2.1	Tomato	plastid	89.76	79.28
PGSC0003DMT400058821	Potato	plastid	89.45	79.0
EES19518	Sorghum	mitochondrion, plastid	89.61	78.81
KRH20991	Soybean	plastid	88.82	78.22
GSMUA_Achr3P24940_001	Banana	plastid	91.5	77.67
KRH11287	Soybean	peroxisome, plastid	52.76	77.55
TraesCS1D01G255100.1	Wheat	plastid	86.93	77.53
TraesCS1A01G255800.1	Wheat	plastid	86.93	77.53
KRH50940	Soybean	plastid	89.45	77.49
TraesCS1B01G266500.1	Wheat	plastid	86.77	77.39
Bra033495.1-P	Field mustard	plastid	86.14	77.26
CDY64791	Canola	plastid	87.09	77.23
AT4G15560.1	Thale cress	plastid	86.93	76.99
CDY09752	Canola	plastid	86.61	76.6
HORVU1Hr1G060610.9	Barley	mitochondrion, plastid	87.09	76.17
CDX90583	Canola	plastid	82.05	76.17
Bra012779.1-P	Field mustard	plastid	81.89	76.02
Zm00001d038170_P001	Maize	plastid	89.29	75.8
CDY32433	Canola	plastid	84.41	74.86
GSMUA_Achr4P17600_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	47.87	74.51
CDY48893	Canola	plastid	83.94	74.44
AT3G21500.3	Thale cress	plastid	78.11	73.26
CDY52177	Canola	plastid	83.46	72.31
GSMUA_Achr5P15060_001	Banana	plastid	72.91	67.0
GSMUA_Achr5P24730_001	Banana	plastid	73.07	65.63
KRH16140	Soybean	mitochondrion, plastid	11.81	57.25
GSMUA_Achr5P06150_001	Banana	plastid	59.21	52.96
GSMUA_Achr4P17610_001	Banana	extracellular, nucleus	0.16	0.05

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:9.1.2.2	InterPro:Dxylulose-5-P_synthase
GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008661
GO:GO:0009058	GO:GO:0009987	GO:GO:0016114	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr10G01400_001	EnsemblPlants:GSMUA_Achr10P01400_001
EnsemblPlants:GSMUA_Achr10T01400_001	InterPro:IPR009014	UniProt:M0REG7	HAMAP:MF_00315	PFAM:PF02779	PFAM:PF02780
PFAM:PF13292	ScanProsite:PS00801	ScanProsite:PS00802	PANTHER:PTHR43322	PANTHER:PTHR43322:SF4	SMART:SM00861
SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	TIGRFAMs:TIGR00204	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd
InterPro:Transketolase_BS	InterPro:Transketolase_C	InterPro:Transketolase_N	UniParc:UPI000296BD58	SEG:seg	:

Description

Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr10G01400_001]

Coordinates

chr10:-:3402121..3405669

Molecular Weight (calculated)

68088.8 Da

IEP (calculated)

6.790

GRAVY (calculated)

-0.055

Length

635 amino acids

Sequence
(BLAST)

001: MKNLSVRELK QLADELRSDI IFNVSRTGGH LGSSLGVVEL TVALHYVFNA PQDKILWDVG HQSYPHKILT GRRDKMATMR QTNGLSGFTK RSESEYDCFG
101: AGHSSTSISA ALGMAVGRDL KGRKNNVVAV IGDGAMTAGQ AYEAMNNAGY LDSDMIVILN DNKQVSLPTA TLDGPVPPVG ALSSALSRLQ SSKPLRELRE
201: VAKGVTKQIG GSMHEIAAKV DEYARGMIGG SGSTLFEELG LYYIGPVDGH NIDDLVAILK DVKSTKTTGP VLIHVVTEKG RGYPYAEKAA DKYHGVAKFD
301: PATGKQFKSG SKTQSYTNYF AEALIAEAEV DEGIVAIHAA MGGGTGLNYF LRCYPTRCFD VGIAEQHAVT FAAGLACEGL KPFCAIYSSF LQRAYDQVIH
401: DVDLQKLPVR FAMDRAGLVG ADGPTHCGSF DVTYMACLPN MVVMAPSDEA ELFHMVATAA AIDDRPSCFR YPRGNGIGVP LPPGNKGIPL EVGKGRILKE
501: GERVTLLGYG TAVQSCLAAA SLLEERGLKI TVADARFCKP LDRSLIRNLA RSHEVLLTVE EGSIGGFGSH VVQFLALDGL LDGTLKWRPV VLPDRYIDHG
601: SPRDQLAEAG LTPSHIAATV LNILGQTREA LEIMS

Best Arabidopsis Sequence Match ( AT4G15560.1 )
(BLAST)

001: MASSAFAFPS YIITKGGLST DSCKSTSLSS SRSLVTDLPS PCLKPNNNSH SNRRAKVCAS LAEKGEYYSN RPPTPLLDTI NYPIHMKNLS VKELKQLSDE
101: LRSDVIFNVS KTGGHLGSSL GVVELTVALH YIFNTPQDKI LWDVGHQSYP HKILTGRRGK MPTMRQTNGL SGFTKRGESE HDCFGTGHSS TTISAGLGMA
201: VGRDLKGKNN NVVAVIGDGA MTAGQAYEAM NNAGYLDSDM IVILNDNKQV SLPTATLDGP SPPVGALSSA LSRLQSNPAL RELREVAKGM TKQIGGPMHQ
301: LAAKVDEYAR GMISGTGSSL FEELGLYYIG PVDGHNIDDL VAILKEVKST RTTGPVLIHV VTEKGRGYPY AERADDKYHG VVKFDPATGR QFKTTNKTQS
401: YTTYFAEALV AEAEVDKDVV AIHAAMGGGT GLNLFQRRFP TRCFDVGIAE QHAVTFAAGL ACEGLKPFCA IYSSFMQRAY DQVVHDVDLQ KLPVRFAMDR
501: AGLVGADGPT HCGAFDVTFM ACLPNMIVMA PSDEADLFNM VATAVAIDDR PSCFRYPRGN GIGVALPPGN KGVPIEIGKG RILKEGERVA LLGYGSAVQS
601: CLGAAVMLEE RGLNVTVADA RFCKPLDRAL IRSLAKSHEV LITVEEGSIG GFGSHVVQFL ALDGLLDGKL KWRPMVLPDR YIDHGAPADQ LAEAGLMPSH
701: IAATALNLIG APREALF

Arabidopsis Description

DXSDXS1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.