Factsheet for GSMUA_Achr4P21100_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P24940_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22970.1	GSMUA_Achr10P...	AT4G15560.1	24104567
AT3G22970.1	GSMUA_Achr3P24940_001	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P20590_001	Banana	plastid	65.74	65.01
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	67.69	63.61
GSMUA_Achr3P15230_001	Banana	cytosol	56.27	59.94
GSMUA_Achr9P25590_001	Banana	plastid	66.85	58.97
GSMUA_Achr4P14880_001	Banana	mitochondrion	42.06	57.2
GSMUA_Achr8P26930_001	Banana	cytosol	54.04	54.96
GSMUA_Achr8P04470_001	Banana	cytosol	55.99	54.62
Os03t0162500-01	Rice	plastid	44.57	52.12
EER95459	Sorghum	plastid	42.9	51.51
TraesCS4B01G278500.1	Wheat	peroxisome, plastid	44.29	51.13
TraesCS4D01G277000.1	Wheat	peroxisome, plastid	44.29	51.13
TraesCS4A01G025500.1	Wheat	peroxisome, plastid	44.85	51.11
Zm00001d027763_P001	Maize	plastid	42.62	51.0
HORVU4Hr1G073730.1	Barley	peroxisome, plastid	44.57	50.79
EER91615	Sorghum	mitochondrion	41.23	50.51
KRH71351	Soybean	cytosol	50.42	50.42
TraesCS5B01G442200.1	Wheat	plastid	52.65	50.4
VIT_05s0020g04500.t01	Wine grape	nucleus	53.76	50.0
Zm00001d032955_P001	Maize	cytosol, mitochondrion, nucleus, plastid	41.5	49.67
TraesCS5A01G439200.1	Wheat	plastid	51.81	49.6
KRH32089	Soybean	cytosol	46.8	49.56
Os10t0417800-01	Rice	plastid	41.5	49.5
TraesCS5D01G446400.1	Wheat	plastid	52.37	49.34
CDX92970	Canola	cytosol	45.68	49.25
Bra001897.1-P	Field mustard	cytosol	45.68	49.25
CDY29750	Canola	nucleus, plastid	48.19	48.87
Bra017099.1-P	Field mustard	cytosol	40.67	48.67
Bra036877.1-P	Field mustard	cytosol, plastid	47.91	48.59
CDY18366	Canola	cytosol	40.39	48.33
Bra033896.1-P	Field mustard	cytosol	49.3	48.23
PGSC0003DMT400041951	Potato	cytosol	49.58	48.11
KRH34359	Soybean	plastid	51.81	48.06
CDY16266	Canola	nucleus	47.63	47.9
AT2G38820.2	Thale cress	cytosol	41.23	47.74
CDX93300	Canola	cytosol	39.83	47.67
KRG92439	Soybean	plastid	51.81	47.33
CDX94877	Canola	cytosol	45.68	47.26
CDY07696	Canola	cytosol	40.95	47.12
Bra000098.1-P	Field mustard	cytosol	40.39	46.93
VIT_00s0179g00360.t01	Wine grape	cytosol	51.81	46.85
CDY10330	Canola	cytosol	47.63	46.72
CDY14428	Canola	cytosol	40.11	46.3
KRG95606	Soybean	cytosol	46.24	45.98
AT4G14620.1	Thale cress	cytosol	43.45	45.75
Os03t0796600-01	Rice	cytosol, nucleus, plastid	51.53	45.68
AT3G22970.1	Thale cress	plastid	47.08	45.68
EER93295	Sorghum	plastid	49.86	45.55
HORVU5Hr1G105950.2	Barley	plastid	51.25	45.21
AT3G54550.1	Thale cress	plastid	36.21	45.14
PGSC0003DMT400015576	Potato	cytosol, plastid	49.58	44.95
Zm00001d018962_P001	Maize	mitochondrion, plastid	47.91	44.91
Solyc09g082980.2.1	Tomato	nucleus	48.75	43.97
Solyc06g053910.2.1	Tomato	cytosol, plastid	47.63	43.96
Zm00001d034444_P002	Maize	plastid	49.58	43.95
CDY10329	Canola	plastid	45.96	43.65
KRH69065	Soybean	cytosol	44.29	43.44
KRH31637	Soybean	cytosol	45.4	42.56
Zm00001d007820_P002	Maize	plastid	47.35	42.39
PGSC0003DMT400049773	Potato	nucleus	46.24	38.25
Solyc09g065760.2.1	Tomato	cytosol, plastid	45.13	37.24
EER98072	Sorghum	cytosol, plastid	45.96	34.81
GSMUA_Achr6P21070_001	Banana	cytosol	26.46	31.88
GSMUA_Achr7P03040_001	Banana	nucleus	21.17	29.34
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	16.71	28.85
GSMUA_Achr7P24960_001	Banana	cytosol	20.61	27.01
GSMUA_Achr3P03980_001	Banana	cytosol	20.89	26.13
GSMUA_Achr3P31780_001	Banana	cytosol	20.61	25.78
GSMUA_Achr4P02600_001	Banana	nucleus	19.78	25.54
GSMUA_Achr10P...	Banana	mitochondrion	23.68	24.43
GSMUA_Achr5P07100_001	Banana	cytosol	23.12	16.05

Protein Annotations

EnsemblPlants:GSMUA_Achr4P21100_001	EnsemblPlants:GSMUA_Achr4T21100_001	EnsemblPlantsGene:GSMUA_Achr4G21100_001	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF19
PFAM:PF04720	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI0002965E35	UniProt:M0SQS3	MapMan:35.2

Description

Whole genome shotgun sequence of line PN40024, scaffold_179.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G21100_001]

Coordinates

chr4:-:21617842..21620161

Molecular Weight (calculated)

39511.5 Da

IEP (calculated)

5.941

GRAVY (calculated)

-0.586

Length

359 amino acids

Sequence
(BLAST)

001: MPFQMKVQPI DAKGSFRIDA AKPAAKSRLK RLFERQFPSV LRISSAEKPG DGREKEREDD GCEVEPSSVC LDKMVVSFME DGGNERPQRS RCNCFNVNYD
101: DSSDDDFDFR GSGDPPGAGD AAEFIEGLVL CASIAERNLL ADASKIMEKA KNWNGKSECR RIVVDGLQSL GYDAAICKSR WDKNPSFPAG EYEYLDVVVD
201: GGERLLIDVD FRSEFEIARS TKSYRAVLQH LPSLFVGRSE RLQQIVAAVS EAARQSLRKK GLHVPPWRKP EYMRSKWLSP YHRTSTAKPE AEPANDPRST
301: SAAEPIPELE RAVEAPGGGD SKAGEEGKAE AVAVAQPWQP PPARPRSGVR VVAGLAAVL

Best Arabidopsis Sequence Match ( AT3G22970.1 )
(BLAST)

001: MPFTMKIQPI DIDSSPTVAR AESGNKPVLK SRLKRLFDRP FTNVLRNSTT TTTEKPFVVT GGEVQCGGVV TEFEPSSVCL AKMVQNFIEE NNEKQAKCGR
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP

Arabidopsis Description

At3g22970 [Source:UniProtKB/TrEMBL;Acc:Q9LIJ8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.