Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400079089 | Potato | cytosol | 29.73 | 50.66 |
| TraesCS3A01G409700.1 | Wheat | cytosol | 44.79 | 47.93 |
| TraesCS3D01G404300.1 | Wheat | nucleus | 45.17 | 47.56 |
| Zm00001d042631_P001 | Maize | cytosol | 39.0 | 47.42 |
| TraesCS3B01G442800.1 | Wheat | cytosol | 43.63 | 47.08 |
| VIT_04s0044g00970.t01 | Wine grape | cytosol | 47.88 | 45.76 |
| HORVU3Hr1G091440.2 | Barley | cytosol | 42.86 | 45.68 |
| Os01t0879600-00 | Rice | plastid | 50.58 | 43.38 |
| Solyc06g054640.1.1 | Tomato | cytosol | 37.07 | 43.24 |
| OQU87982 | Sorghum | cytosol | 46.72 | 43.06 |
| VIT_18s0001g15610.t01 | Wine grape | cytosol | 45.56 | 42.75 |
| KRH43403 | Soybean | cytosol | 43.63 | 42.64 |
| KRH59552 | Soybean | cytosol | 44.02 | 41.91 |
| Bra015689.1-P | Field mustard | nucleus | 32.82 | 33.07 |
| CDX87538 | Canola | nucleus | 32.82 | 33.07 |
| CDX88346 | Canola | nucleus | 32.43 | 32.68 |
| CDX87539 | Canola | nucleus | 30.12 | 29.1 |
| Bra015690.1-P | Field mustard | nucleus | 30.12 | 29.1 |
| AT1G77145.1 | Thale cress | cytosol | 28.57 | 28.46 |
| CDX88345 | Canola | nucleus | 28.96 | 27.99 |
| AT1G77160.1 | Thale cress | cytosol | 28.19 | 27.76 |
| CDX88344 | Canola | cytosol | 28.19 | 27.55 |
| Bra015691.1-P | Field mustard | cytosol | 27.8 | 27.38 |
| CDX87540 | Canola | cytosol | 27.8 | 27.38 |
| GSMUA_Achr4P14880_001 | Banana | mitochondrion | 26.64 | 26.14 |
| GSMUA_Achr4P02600_001 | Banana | nucleus | 23.94 | 22.3 |
| GSMUA_Achr7P24960_001 | Banana | cytosol | 22.78 | 21.53 |
| GSMUA_Achr3P15230_001 | Banana | cytosol | 27.8 | 21.36 |
| GSMUA_Achr8P26930_001 | Banana | cytosol | 28.96 | 21.25 |
| GSMUA_Achr4P21100_001 | Banana | cytosol, plastid | 29.34 | 21.17 |
| GSMUA_Achr3P03980_001 | Banana | cytosol | 23.17 | 20.91 |
| GSMUA_Achr6P21070_001 | Banana | cytosol | 23.94 | 20.81 |
| GSMUA_Achr8P20590_001 | Banana | plastid | 28.19 | 20.11 |
| GSMUA_Achr8P04470_001 | Banana | cytosol | 28.57 | 20.11 |
| GSMUA_Achr9P10660_001 | Banana | cytosol, plastid | 28.96 | 19.63 |
| GSMUA_Achr10P... | Banana | mitochondrion | 26.25 | 19.54 |
| GSMUA_Achr3P31780_001 | Banana | cytosol | 21.62 | 19.51 |
| GSMUA_Achr9P25590_001 | Banana | plastid | 30.12 | 19.16 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 14.67 | 18.27 |
| GSMUA_Achr5P07100_001 | Banana | cytosol | 27.8 | 13.93 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P03040_001 | EnsemblPlants:GSMUA_Achr7T03040_001 | EnsemblPlantsGene:GSMUA_Achr7G03040_001 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF10 |
| PFAM:PF04720 | SEG:seg | TIGRFAMs:TIGR01615 | UniParc:UPI000296EA92 | UniProt:M0TE94 | MapMan:35.2 |
Description
Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G03040_001]
Coordinates
chr7:+:2427846..2428911
Molecular Weight (calculated)
28783.6 Da
IEP (calculated)
8.484
GRAVY (calculated)
-0.395
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSEEERLV QMVHDFMESD APPPPTTPSA TGTTSLHQQT LLLLEGILGD NTHAEMEVFE KALKHVRDAG DERKRSKVNK RLMMRLRMDG YDASLCRSSW
101: VATMECPGGD YEFIDIVMVD GNGVSTRIII DIDFRSQFEL ARPTLAYTQL SSILPPIFVG KEEKLKKVVS LLCSAAQQSL RERGLHIPPW RRSSYMQAKW
201: LSCCQKASTI PYTSSSIQDI AKLKGRHAST KSKGRDAESK GPKGSALSSQ FSHLSINCC
101: VATMECPGGD YEFIDIVMVD GNGVSTRIII DIDFRSQFEL ARPTLAYTQL SSILPPIFVG KEEKLKKVVS LLCSAAQQSL RERGLHIPPW RRSSYMQAKW
201: LSCCQKASTI PYTSSSIQDI AKLKGRHAST KSKGRDAESK GPKGSALSSQ FSHLSINCC
001: MGSLGEEDFE KLVLGYIESP MTVSQHINTS SKALITLQEI FLQEILRAKG VEEKEMEEKI RSYINRGRLS YEGDDEKRDV MNKIVSKLRS EGYNASLSKT
101: SWDSSFDHRE GCRVFTCSRK YEYIDAMVIG DSDRDGVSKL KRVIIDLDFK TQFELARQTE AYKDMTEMLP TVFVATEGRL RRVVSLVCGE MKKSMKKEGM
201: SRPPWRTSRY MQSKWLPENC RRDAGCKKGS WSWSVFDDGG EGIGEARSWT VSGPKTKCCF PIF
101: SWDSSFDHRE GCRVFTCSRK YEYIDAMVIG DSDRDGVSKL KRVIIDLDFK TQFELARQTE AYKDMTEMLP TVFVATEGRL RRVVSLVCGE MKKSMKKEGM
201: SRPPWRTSRY MQSKWLPENC RRDAGCKKGS WSWSVFDDGG EGIGEARSWT VSGPKTKCCF PIF
Arabidopsis Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q45GL9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.