Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- cytosol 2
- plastid 1
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P24960_001 | Banana | cytosol | 76.66 | 80.29 |
| GSMUA_Achr4P02600_001 | Banana | nucleus | 72.82 | 75.18 |
| HORVU3Hr1G071220.1 | Barley | nucleus | 50.87 | 55.73 |
| EES01469 | Sorghum | nucleus | 52.61 | 53.55 |
| TraesCS3D01G273300.1 | Wheat | nucleus | 51.57 | 53.43 |
| TraesCS3B01G307800.1 | Wheat | nucleus | 51.92 | 53.41 |
| TraesCS3A01G274100.1 | Wheat | nucleus | 51.22 | 52.69 |
| Zm00001d043444_P001 | Maize | nucleus | 51.57 | 52.11 |
| EES19824 | Sorghum | cytosol | 50.87 | 48.51 |
| Os05t0519300-01 | Rice | cytosol | 51.57 | 48.37 |
| HORVU1Hr1G076120.1 | Barley | nucleus | 45.99 | 46.98 |
| VIT_12s0028g03560.t01 | Wine grape | cytosol | 49.48 | 46.86 |
| KRH25597 | Soybean | nucleus | 45.64 | 45.64 |
| TraesCS1B01G352000.1 | Wheat | nucleus | 45.3 | 45.45 |
| TraesCS1D01G341700.1 | Wheat | cytosol | 45.64 | 45.17 |
| TraesCS1A01G339700.1 | Wheat | cytosol | 45.64 | 45.02 |
| VIT_00s0265g00090.t01 | Wine grape | mitochondrion | 47.39 | 44.01 |
| AT4G32480.1 | Thale cress | nucleus | 43.9 | 43.9 |
| CDY18979 | Canola | nucleus | 44.95 | 43.14 |
| PGSC0003DMT400076442 | Potato | nucleus | 45.3 | 43.05 |
| Bra026262.1-P | Field mustard | nucleus | 44.6 | 42.81 |
| CDY49659 | Canola | nucleus | 44.6 | 42.81 |
| Bra024209.1-P | Field mustard | nucleus | 43.9 | 42.71 |
| CDY29898 | Canola | nucleus | 43.9 | 42.71 |
| CDX92863 | Canola | nucleus | 43.55 | 42.37 |
| KRH10888 | Soybean | mitochondrion | 43.9 | 42.0 |
| Solyc02g078150.2.1 | Tomato | nucleus | 44.95 | 41.88 |
| Solyc02g078160.2.1 | Tomato | nucleus | 43.9 | 41.72 |
| CDY13861 | Canola | nucleus | 42.16 | 40.88 |
| PGSC0003DMT400033381 | Potato | cytosol, mitochondrion, nucleus | 43.55 | 40.85 |
| CDY05782 | Canola | nucleus | 42.16 | 40.74 |
| Bra036492.1-P | Field mustard | nucleus | 42.16 | 40.74 |
| CDX81975 | Canola | nucleus | 41.81 | 40.54 |
| Bra031136.1-P | Field mustard | nucleus | 41.46 | 40.48 |
| Solyc03g006410.2.1 | Tomato | cytosol | 42.86 | 40.46 |
| KRH20449 | Soybean | mitochondrion | 46.34 | 40.43 |
| KRH21430 | Soybean | mitochondrion, nucleus | 42.51 | 40.4 |
| CDY31947 | Canola | nucleus | 41.46 | 40.07 |
| AT2G20670.1 | Thale cress | nucleus | 40.77 | 39.8 |
| KRH50053 | Soybean | mitochondrion | 43.55 | 38.82 |
| PGSC0003DMT400047228 | Potato | nucleus | 38.33 | 38.73 |
| Solyc07g053900.2.1 | Tomato | cytosol | 38.68 | 34.69 |
| GSMUA_Achr4P14880_001 | Banana | mitochondrion | 21.95 | 23.86 |
| GSMUA_Achr3P15230_001 | Banana | cytosol | 25.78 | 21.96 |
| GSMUA_Achr7P03040_001 | Banana | nucleus | 19.51 | 21.62 |
| GSMUA_Achr8P26930_001 | Banana | cytosol | 25.78 | 20.96 |
| GSMUA_Achr6P21070_001 | Banana | cytosol | 21.6 | 20.81 |
| GSMUA_Achr4P21100_001 | Banana | cytosol, plastid | 25.78 | 20.61 |
| GSMUA_Achr9P10660_001 | Banana | cytosol, plastid | 26.83 | 20.16 |
| GSMUA_Achr8P04470_001 | Banana | cytosol | 25.44 | 19.84 |
| GSMUA_Achr3P03980_001 | Banana | cytosol | 19.51 | 19.51 |
| GSMUA_Achr8P20590_001 | Banana | plastid | 24.39 | 19.28 |
| GSMUA_Achr9P25590_001 | Banana | plastid | 25.44 | 17.94 |
| GSMUA_Achr10P... | Banana | mitochondrion | 21.6 | 17.82 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 11.15 | 15.38 |
| GSMUA_Achr5P07100_001 | Banana | cytosol | 23.0 | 12.77 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P31780_001 | EnsemblPlants:GSMUA_Achr3T31780_001 | EnsemblPlantsGene:GSMUA_Achr3G31780_001 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF2 |
| PFAM:PF04720 | SEG:seg | TIGRFAMs:TIGR01615 | UniParc:UPI0002955638 | UniProt:M0SJJ2 | MapMan:35.2 |
Description
plant-specific domain TIGR01615 family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G31780_001]
Coordinates
chr3:+:29946670..29948019
Molecular Weight (calculated)
31561.8 Da
IEP (calculated)
8.151
GRAVY (calculated)
-0.431
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLVEAMDGR MSLSDTVFSF LEEGEGGGSG AGTEESPDGS CRGGGDGFDS GDEGTSDGAV ENKAFWESQQ QLLREALSRT SSTEVKLLQR TNDAVNKMRA
101: EGVVCTCSSS TAKECRNCAL VFVAEQLHRL GYNSALCKSK WRRSPDIPSG EHRYVDVVME TKSGKKGPVR LVIELRFRAE FEMARGSQEY NSLVSCLPEV
201: FVGKPEKLRG VIKVMCAAAK KCMKDNKMHM APWRKHKYMQ SKWLGTPERT GPVMSFPAAV VVPDHPQPKL RASMLTFDLH RTAVEVV
101: EGVVCTCSSS TAKECRNCAL VFVAEQLHRL GYNSALCKSK WRRSPDIPSG EHRYVDVVME TKSGKKGPVR LVIELRFRAE FEMARGSQEY NSLVSCLPEV
201: FVGKPEKLRG VIKVMCAAAK KCMKDNKMHM APWRKHKYMQ SKWLGTPERT GPVMSFPAAV VVPDHPQPKL RASMLTFDLH RTAVEVV
001: MDRQSSDDIM KFLDGMASSD DVLFGFLDEG NHSPEDYNFA AGDESEVDND TTDCNSEENR KFWQEHEQLL QATLYRTSSI ETKIRQATKE ALKVVRSKGL
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
Arabidopsis Description
AT4g32480/F8B4_180 [Source:UniProtKB/TrEMBL;Acc:Q9SUU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.