Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49659 | Canola | nucleus | 97.66 | 97.66 |
| CDY29898 | Canola | nucleus | 83.95 | 85.08 |
| CDX92863 | Canola | nucleus | 83.95 | 85.08 |
| AT4G32480.1 | Thale cress | nucleus | 77.59 | 80.84 |
| CDY31947 | Canola | nucleus | 70.23 | 70.71 |
| CDY05782 | Canola | nucleus | 70.23 | 70.71 |
| CDX81975 | Canola | nucleus | 69.57 | 70.27 |
| CDY13861 | Canola | nucleus | 68.23 | 68.92 |
| VIT_12s0028g03560.t01 | Wine grape | cytosol | 51.51 | 50.83 |
| KRH25597 | Soybean | nucleus | 44.48 | 46.34 |
| GSMUA_Achr3P31780_001 | Banana | cytosol | 43.14 | 44.95 |
| HORVU3Hr1G071220.1 | Barley | nucleus | 38.8 | 44.27 |
| PGSC0003DMT400047228 | Potato | nucleus | 41.81 | 44.01 |
| GSMUA_Achr7P24960_001 | Banana | cytosol | 40.13 | 43.8 |
| EES01469 | Sorghum | nucleus | 40.47 | 42.91 |
| GSMUA_Achr4P02600_001 | Banana | nucleus | 39.8 | 42.81 |
| Zm00001d043444_P001 | Maize | nucleus | 40.47 | 42.61 |
| TraesCS3D01G273300.1 | Wheat | nucleus | 39.13 | 42.24 |
| TraesCS3A01G274100.1 | Wheat | nucleus | 39.13 | 41.94 |
| TraesCS3B01G307800.1 | Wheat | nucleus | 38.8 | 41.58 |
| Solyc07g053900.2.1 | Tomato | cytosol | 43.14 | 40.31 |
| HORVU1Hr1G076120.1 | Barley | nucleus | 35.45 | 37.72 |
| TraesCS1D01G341700.1 | Wheat | cytosol | 36.45 | 37.59 |
| TraesCS1B01G352000.1 | Wheat | nucleus | 35.79 | 37.41 |
| TraesCS1A01G339700.1 | Wheat | cytosol | 36.12 | 37.11 |
| EES19824 | Sorghum | cytosol | 36.12 | 35.88 |
| Os05t0519300-01 | Rice | cytosol | 36.45 | 35.62 |
| CDY52283 | Canola | nucleus | 20.4 | 21.63 |
| CDY15101 | Canola | nucleus | 20.07 | 21.58 |
| CDY24955 | Canola | cytosol | 20.4 | 20.2 |
| CDY30048 | Canola | mitochondrion | 19.73 | 20.0 |
| CDY07644 | Canola | cytosol | 20.07 | 19.93 |
| CDY53353 | Canola | mitochondrion | 19.4 | 19.8 |
| CDY31234 | Canola | cytosol | 19.4 | 19.73 |
| CDY21027 | Canola | cytosol | 19.4 | 19.66 |
| CDX88346 | Canola | nucleus | 16.39 | 19.07 |
| CDY60822 | Canola | nucleus | 18.73 | 18.73 |
| CDX87538 | Canola | nucleus | 16.05 | 18.68 |
| CDY35924 | Canola | nucleus | 18.73 | 18.67 |
| CDY34904 | Canola | nucleus | 18.73 | 18.54 |
| CDY29750 | Canola | nucleus, plastid | 21.74 | 18.36 |
| CDY28060 | Canola | cytosol, nucleus, plastid | 18.39 | 18.33 |
| CDX92970 | Canola | cytosol | 20.4 | 18.32 |
| CDX88345 | Canola | nucleus | 16.39 | 18.28 |
| CDY07696 | Canola | cytosol | 19.06 | 18.27 |
| CDY14428 | Canola | cytosol | 18.73 | 18.01 |
| CDX93300 | Canola | cytosol | 18.06 | 18.0 |
| CDY18366 | Canola | cytosol | 18.06 | 18.0 |
| CDX87539 | Canola | nucleus | 16.05 | 17.91 |
| CDX88344 | Canola | cytosol | 15.72 | 17.74 |
| CDY16266 | Canola | nucleus | 21.07 | 17.65 |
| CDX87540 | Canola | cytosol | 15.38 | 17.49 |
| CDX94877 | Canola | cytosol | 20.07 | 17.29 |
| CDY10330 | Canola | cytosol | 19.4 | 15.85 |
| CDY10329 | Canola | plastid | 19.06 | 15.08 |
Protein Annotations
| EnsemblPlants:CDY18979 | EnsemblPlantsGene:GSBRNA2T00006211001 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF33 | PFAM:PF04720 |
| ProteinID:CDY18979 | ProteinID:CDY18979.1 | SEG:seg | TIGRFAMs:TIGR01615 | UniParc:UPI0001B637ED | UniProt:A0A078G0F9 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC01g20890DBnaC01g20890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G0F9]
Coordinates
chrLK032091:-:127061..128485
Molecular Weight (calculated)
33725.4 Da
IEP (calculated)
7.637
GRAVY (calculated)
-0.539
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRQDSDDIM KFLDGMASSD DVLFGFLDGG NHSPEVYPDT GSFAAGEDSY AENDAAGCNS DENKTFWLEQ EQLLQATLYR TSSIETKIRQ AAKQALKEVR
101: SEGTQCVCRR PVAGGCRSCL RGEVARRLRE AGYDCVSCKS KWRSNHEIPA GEHEYLEIVD QSGSKKVEIR VVIELSFRAE FEMARGSEEY KRLVGILPEV
201: YVGKTERLRT LIKILCMAAK KCMKDKKMHM GPWRKHKYMQ AKWLGTCERK SMRLVAETKT ETEEEDMIAK AKQRVSMLNY GIFENVSAGM GRPAAVAVV
101: SEGTQCVCRR PVAGGCRSCL RGEVARRLRE AGYDCVSCKS KWRSNHEIPA GEHEYLEIVD QSGSKKVEIR VVIELSFRAE FEMARGSEEY KRLVGILPEV
201: YVGKTERLRT LIKILCMAAK KCMKDKKMHM GPWRKHKYMQ AKWLGTCERK SMRLVAETKT ETEEEDMIAK AKQRVSMLNY GIFENVSAGM GRPAAVAVV
001: MDRQSSDDIM KFLDGMASSD DVLFGFLDEG NHSPEDYNFA AGDESEVDND TTDCNSEENR KFWQEHEQLL QATLYRTSSI ETKIRQATKE ALKVVRSKGL
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
Arabidopsis Description
AT4g32480/F8B4_180 [Source:UniProtKB/TrEMBL;Acc:Q9SUU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.