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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra031136.1-P Field mustard nucleus 96.96 97.62
CDX81975 Canola nucleus 96.62 96.62
CDY05782 Canola nucleus 88.85 88.55
CDY31947 Canola nucleus 88.51 88.22
AT2G20670.1 Thale cress nucleus 84.8 85.37
CDY29898 Canola nucleus 70.61 70.85
CDX92863 Canola nucleus 70.27 70.51
CDY18979 Canola nucleus 68.92 68.23
CDY49659 Canola nucleus 68.58 67.89
VIT_12s0028g03560.t01 Wine grape cytosol 51.01 49.84
KRH25597 Soybean nucleus 44.26 45.64
PGSC0003DMT400047228 Potato nucleus 41.55 43.31
HORVU3Hr1G071220.1 Barley nucleus 38.18 43.13
GSMUA_Achr7P24960_001 Banana cytosol 39.19 42.34
GSMUA_Achr3P31780_001 Banana cytosol 40.88 42.16
TraesCS3B01G307800.1 Wheat nucleus 38.85 41.22
Zm00001d043444_P001 Maize nucleus 39.53 41.2
EES01469 Sorghum nucleus 39.19 41.13
GSMUA_Achr4P02600_001 Banana nucleus 38.51 41.01
TraesCS3A01G274100.1 Wheat nucleus 38.51 40.86
TraesCS3D01G273300.1 Wheat nucleus 37.84 40.43
Solyc07g053900.2.1 Tomato cytosol 43.58 40.31
HORVU1Hr1G076120.1 Barley nucleus 35.81 37.72
TraesCS1B01G352000.1 Wheat nucleus 35.14 36.36
TraesCS1D01G341700.1 Wheat cytosol 35.47 36.21
TraesCS1A01G339700.1 Wheat cytosol 35.14 35.74
Os05t0519300-01 Rice cytosol 36.49 35.29
EES19824 Sorghum cytosol 34.46 33.89
CDX87538 Canola nucleus 19.26 22.18
CDX88346 Canola nucleus 19.26 22.18
CDY52283 Canola nucleus 19.26 20.21
CDY07644 Canola cytosol 20.27 19.93
CDY15101 Canola nucleus 18.58 19.78
CDY24955 Canola cytosol 19.93 19.54
CDX92970 Canola cytosol 21.96 19.52
CDY31234 Canola cytosol 19.26 19.39
CDY28060 Canola cytosol, nucleus, plastid 19.59 19.33
CDY35924 Canola nucleus 19.59 19.33
CDY21027 Canola cytosol 19.26 19.32
CDX88344 Canola cytosol 17.23 19.25
CDX88345 Canola nucleus 17.23 19.03
CDY53353 Canola mitochondrion 18.58 18.77
CDX87539 Canola nucleus 16.89 18.66
CDY29750 Canola nucleus, plastid 22.3 18.64
CDX87540 Canola cytosol 16.55 18.63
CDX93300 Canola cytosol 18.58 18.33
CDY18366 Canola cytosol 18.58 18.33
CDY30048 Canola mitochondrion 18.24 18.31
CDY07696 Canola cytosol 19.26 18.27
CDY16266 Canola nucleus 21.96 18.21
CDX94877 Canola cytosol 21.28 18.16
CDY14428 Canola cytosol 18.92 18.01
CDY10330 Canola cytosol 21.96 17.76
CDY34904 Canola nucleus 17.57 17.22
CDY60822 Canola nucleus 17.23 17.06
CDY10329 Canola plastid 21.62 16.93
Protein Annotations
EnsemblPlants:CDY13861EnsemblPlantsGene:GSBRNA2T00078309001InterPro:PDDEXK-likePANTHER:PTHR31579PANTHER:PTHR31579:SF33PFAM:PF04720
ProteinID:CDY13861ProteinID:CDY13861.1TIGRFAMs:TIGR01615UniParc:UPI0004EEA1F2UniProt:A0A078FL49MapMan:35.2
Description
BnaA09g43630DBnaA09g43630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FL49]
Coordinates
chrLK032038:+:694098..695395
Molecular Weight (calculated)
33294.6 Da
IEP (calculated)
7.359
GRAVY (calculated)
-0.576
Length
296 amino acids
Sequence
(BLAST)
001: MDRQSSDDIM RFLDGMASSD DVLFGFLDEG NQSPEDFNLN GGSDTDDVDG NGNCTSEENK VFWQEQEQLL QGTLYRTSSI ETKIRQATKE ALKQVKSKGL
101: HCVCLRPVAG GCRSCLRDEI SRHLRDVAGY DCVTSKSKWR SSQDIPAGEH EYIEIIDRSD SKKGEMRVVI ELSFRAEFEI AKCGEDYKRL ISRLPEVYVG
201: KTDRLRSLIK ILCIAGKKCL RDNKMHMGPW RKHKYMQAKW LGTCERSNSL GAAVSETTEP ENWVPRAKPR VSMLNYDGLL GSLSTGIGRH AAVTVV
Best Arabidopsis Sequence Match ( AT2G20670.1 )
(BLAST)
001: MDRQNSDDIM RFLDGMASSD DVLFGFLDEG NQSPEDFSVN LNAGEDDGDE DDNNNNSEDN KAFWQEHEQL LQGTLYRTSS IETKIRQATK EALKQVKSKG
101: LYCVCRRPVD GGCRSCLRGE ISRHLRDVAG YDCVISKSKW RSCQDIPAGE HEFIEIVDRS GSKKSEMRVV IELSFRAEFE IAKGSEEYKR LISRLPEVYV
201: GKTERLRSLI KILCIAGKKC LRDKKMHMAP WRKHKYMQAK WLGTCDRSSS LEASVSEAME PENWVPVAKP RVSMLNYDGL LGGFSAGPAT VAVV
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SIU5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.