Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G20670.1 | CDY42827 | AT2G42580.1 | 19000166 |
AT2G20670.1 | CDY51514 | AT2G42580.1 | 19000166 |
AT2G20670.1 | CDY55390 | AT2G42580.1 | 19000166 |
AT2G20670.1 | CDY61202 | AT2G42580.1 | 19000166 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra031136.1-P | Field mustard | nucleus | 96.96 | 97.62 |
CDX81975 | Canola | nucleus | 96.62 | 96.62 |
CDY05782 | Canola | nucleus | 88.85 | 88.55 |
CDY31947 | Canola | nucleus | 88.51 | 88.22 |
AT2G20670.1 | Thale cress | nucleus | 84.8 | 85.37 |
CDY29898 | Canola | nucleus | 70.61 | 70.85 |
CDX92863 | Canola | nucleus | 70.27 | 70.51 |
CDY18979 | Canola | nucleus | 68.92 | 68.23 |
CDY49659 | Canola | nucleus | 68.58 | 67.89 |
VIT_12s0028g03560.t01 | Wine grape | cytosol | 51.01 | 49.84 |
KRH25597 | Soybean | nucleus | 44.26 | 45.64 |
PGSC0003DMT400047228 | Potato | nucleus | 41.55 | 43.31 |
HORVU3Hr1G071220.1 | Barley | nucleus | 38.18 | 43.13 |
GSMUA_Achr7P24960_001 | Banana | cytosol | 39.19 | 42.34 |
GSMUA_Achr3P31780_001 | Banana | cytosol | 40.88 | 42.16 |
TraesCS3B01G307800.1 | Wheat | nucleus | 38.85 | 41.22 |
Zm00001d043444_P001 | Maize | nucleus | 39.53 | 41.2 |
EES01469 | Sorghum | nucleus | 39.19 | 41.13 |
GSMUA_Achr4P02600_001 | Banana | nucleus | 38.51 | 41.01 |
TraesCS3A01G274100.1 | Wheat | nucleus | 38.51 | 40.86 |
TraesCS3D01G273300.1 | Wheat | nucleus | 37.84 | 40.43 |
Solyc07g053900.2.1 | Tomato | cytosol | 43.58 | 40.31 |
HORVU1Hr1G076120.1 | Barley | nucleus | 35.81 | 37.72 |
TraesCS1B01G352000.1 | Wheat | nucleus | 35.14 | 36.36 |
TraesCS1D01G341700.1 | Wheat | cytosol | 35.47 | 36.21 |
TraesCS1A01G339700.1 | Wheat | cytosol | 35.14 | 35.74 |
Os05t0519300-01 | Rice | cytosol | 36.49 | 35.29 |
EES19824 | Sorghum | cytosol | 34.46 | 33.89 |
CDX87538 | Canola | nucleus | 19.26 | 22.18 |
CDX88346 | Canola | nucleus | 19.26 | 22.18 |
CDY52283 | Canola | nucleus | 19.26 | 20.21 |
CDY07644 | Canola | cytosol | 20.27 | 19.93 |
CDY15101 | Canola | nucleus | 18.58 | 19.78 |
CDY24955 | Canola | cytosol | 19.93 | 19.54 |
CDX92970 | Canola | cytosol | 21.96 | 19.52 |
CDY31234 | Canola | cytosol | 19.26 | 19.39 |
CDY28060 | Canola | cytosol, nucleus, plastid | 19.59 | 19.33 |
CDY35924 | Canola | nucleus | 19.59 | 19.33 |
CDY21027 | Canola | cytosol | 19.26 | 19.32 |
CDX88344 | Canola | cytosol | 17.23 | 19.25 |
CDX88345 | Canola | nucleus | 17.23 | 19.03 |
CDY53353 | Canola | mitochondrion | 18.58 | 18.77 |
CDX87539 | Canola | nucleus | 16.89 | 18.66 |
CDY29750 | Canola | nucleus, plastid | 22.3 | 18.64 |
CDX87540 | Canola | cytosol | 16.55 | 18.63 |
CDX93300 | Canola | cytosol | 18.58 | 18.33 |
CDY18366 | Canola | cytosol | 18.58 | 18.33 |
CDY30048 | Canola | mitochondrion | 18.24 | 18.31 |
CDY07696 | Canola | cytosol | 19.26 | 18.27 |
CDY16266 | Canola | nucleus | 21.96 | 18.21 |
CDX94877 | Canola | cytosol | 21.28 | 18.16 |
CDY14428 | Canola | cytosol | 18.92 | 18.01 |
CDY10330 | Canola | cytosol | 21.96 | 17.76 |
CDY34904 | Canola | nucleus | 17.57 | 17.22 |
CDY60822 | Canola | nucleus | 17.23 | 17.06 |
CDY10329 | Canola | plastid | 21.62 | 16.93 |
Protein Annotations
EnsemblPlants:CDY13861 | EnsemblPlantsGene:GSBRNA2T00078309001 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF33 | PFAM:PF04720 |
ProteinID:CDY13861 | ProteinID:CDY13861.1 | TIGRFAMs:TIGR01615 | UniParc:UPI0004EEA1F2 | UniProt:A0A078FL49 | MapMan:35.2 |
Description
BnaA09g43630DBnaA09g43630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FL49]
Coordinates
chrLK032038:+:694098..695395
Molecular Weight (calculated)
33294.6 Da
IEP (calculated)
7.359
GRAVY (calculated)
-0.576
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRQSSDDIM RFLDGMASSD DVLFGFLDEG NQSPEDFNLN GGSDTDDVDG NGNCTSEENK VFWQEQEQLL QGTLYRTSSI ETKIRQATKE ALKQVKSKGL
101: HCVCLRPVAG GCRSCLRDEI SRHLRDVAGY DCVTSKSKWR SSQDIPAGEH EYIEIIDRSD SKKGEMRVVI ELSFRAEFEI AKCGEDYKRL ISRLPEVYVG
201: KTDRLRSLIK ILCIAGKKCL RDNKMHMGPW RKHKYMQAKW LGTCERSNSL GAAVSETTEP ENWVPRAKPR VSMLNYDGLL GSLSTGIGRH AAVTVV
101: HCVCLRPVAG GCRSCLRDEI SRHLRDVAGY DCVTSKSKWR SSQDIPAGEH EYIEIIDRSD SKKGEMRVVI ELSFRAEFEI AKCGEDYKRL ISRLPEVYVG
201: KTDRLRSLIK ILCIAGKKCL RDNKMHMGPW RKHKYMQAKW LGTCERSNSL GAAVSETTEP ENWVPRAKPR VSMLNYDGLL GSLSTGIGRH AAVTVV
001: MDRQNSDDIM RFLDGMASSD DVLFGFLDEG NQSPEDFSVN LNAGEDDGDE DDNNNNSEDN KAFWQEHEQL LQGTLYRTSS IETKIRQATK EALKQVKSKG
101: LYCVCRRPVD GGCRSCLRGE ISRHLRDVAG YDCVISKSKW RSCQDIPAGE HEFIEIVDRS GSKKSEMRVV IELSFRAEFE IAKGSEEYKR LISRLPEVYV
201: GKTERLRSLI KILCIAGKKC LRDKKMHMAP WRKHKYMQAK WLGTCDRSSS LEASVSEAME PENWVPVAKP RVSMLNYDGL LGGFSAGPAT VAVV
101: LYCVCRRPVD GGCRSCLRGE ISRHLRDVAG YDCVISKSKW RSCQDIPAGE HEFIEIVDRS GSKKSEMRVV IELSFRAEFE IAKGSEEYKR LISRLPEVYV
201: GKTERLRSLI KILCIAGKKC LRDKKMHMAP WRKHKYMQAK WLGTCDRSSS LEASVSEAME PENWVPVAKP RVSMLNYDGL LGGFSAGPAT VAVV
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SIU5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.