CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX87879
CDY36901
CDY44976
CDY45633
CDY52982
CDY58069
CDY58070
CDY67259
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07350.1	CDX87879	AT1G52240.1	21798944
AT3G07350.1	CDY45633	AT1G52240.1	21798944
AT3G07350.1	CDY52982	AT1G52240.1	21798944
AT3G07350.1	CDY67259	AT1G52240.1	21798944
AT3G07350.1	CDY36901	AT3G48150.1	21798944
AT3G07350.1	CDY44976	AT3G48150.1	21798944
AT3G07350.1	CDY58069	AT3G48150.1	21798944
AT3G07350.1	CDY58070	AT3G48150.1	21798944
AT3G07350.1	CDY70805	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040373.1-P	Field mustard	plastid	64.21	100.0
CDY34904	Canola	nucleus	97.66	96.69
CDY35924	Canola	nucleus	83.95	83.67
CDY28060	Canola	cytosol, nucleus, plastid	83.28	83.0
AT3G07350.1	Thale cress	nucleus	82.27	82.55
VIT_00s0337g00040.t01	Wine grape	cytosol	46.49	49.29
CDY52283	Canola	nucleus	45.15	47.87
CDY15101	Canola	nucleus	43.48	46.76
Solyc06g007580.1.1	Tomato	nucleus	46.15	46.15
PGSC0003DMT400051812	Potato	nucleus	45.82	46.13
PGSC0003DMT400053173	Potato	nucleus	45.48	45.48
Solyc06g083160.1.1	Tomato	nucleus	44.48	45.39
KRH07392	Soybean	nucleus	42.81	42.81
KRH46613	Soybean	mitochondrion, nucleus	39.46	41.4
PGSC0003DMT400008686	Potato	cytosol	35.45	38.69
GSMUA_Achr6P21070_001	Banana	cytosol	35.45	35.57
HORVU4Hr1G054810.1	Barley	mitochondrion	34.11	34.81
TraesCS4D01G188800.1	Wheat	mitochondrion	34.78	34.78
Os11t0437600-01	Rice	plastid	34.78	33.99
Os01t0915000-01	Rice	cytosol	32.78	33.45
TraesCS4B01G187500.1	Wheat	mitochondrion	33.44	33.44
EES04096	Sorghum	cytosol	32.78	33.11
Zm00001d012069_P001	Maize	mitochondrion	31.77	32.99
Zm00001d042376_P001	Maize	cytosol	32.11	32.65
TraesCS3B01G456400.1	Wheat	cytosol	31.1	32.29
TraesCS3A01G420900.1	Wheat	cytosol	31.1	32.07
TraesCS3D01G416400.1	Wheat	cytosol	31.1	31.85
TraesCS4A01G116900.1	Wheat	plastid	34.45	31.6
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	20.74	29.81
Solyc09g057760.2.1	Tomato	nucleus	21.4	29.63
CDY21027	Canola	cytosol	27.09	27.46
CDX93300	Canola	cytosol	27.09	27.0
CDY18366	Canola	cytosol	27.09	27.0
CDY53353	Canola	mitochondrion	26.42	26.96
CDY31234	Canola	cytosol	26.42	26.87
CDY07644	Canola	cytosol	26.42	26.25
CDY24955	Canola	cytosol	26.42	26.16
CDY30048	Canola	mitochondrion	25.75	26.1
CDX88344	Canola	cytosol	22.41	25.28
CDX87538	Canola	nucleus	21.4	24.9
CDX88346	Canola	nucleus	21.07	24.51
CDX87540	Canola	cytosol	21.4	24.33
CDY14428	Canola	cytosol	25.08	24.12
CDX92970	Canola	cytosol	26.76	24.02
CDY07696	Canola	cytosol	24.75	23.72
HORVU3Hr1G093260.1	Barley	plastid	32.11	23.7
CDX87539	Canola	nucleus	21.07	23.51
CDY29750	Canola	nucleus, plastid	27.76	23.45
CDY16266	Canola	nucleus	27.76	23.25
CDY10330	Canola	cytosol	28.43	23.22
CDX94877	Canola	cytosol	26.76	23.05
CDX88345	Canola	nucleus	20.4	22.76
CDY10329	Canola	plastid	27.09	21.43
CDX92863	Canola	nucleus	19.4	19.66
CDY29898	Canola	nucleus	19.06	19.32
CDY49659	Canola	nucleus	18.73	18.73
CDY18979	Canola	nucleus	18.73	18.73
CDY05782	Canola	nucleus	18.06	18.18
CDY31947	Canola	nucleus	18.06	18.18
CDX81975	Canola	nucleus	17.73	17.91
CDY13861	Canola	nucleus	17.06	17.23

Protein Annotations

EnsemblPlants:CDY60822	EnsemblPlantsGene:GSBRNA2T00030104001	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF4	PFAM:PF04720
ProteinID:CDY60822	ProteinID:CDY60822.1	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI0004EE1EB0	UniProt:A0A078J780
MapMan:35.2	:	:	:	:	:

Description

BnaAnng17250DBnaAnng17250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J780]

Coordinates

chrLK033918:-:31354..32253

Molecular Weight (calculated)

33567.6 Da

IEP (calculated)

8.055

GRAVY (calculated)

-0.469

Length

299 amino acids

Sequence
(BLAST)

001: MSFSRAKRVT DPLPDEARAR LVGCSFSSGS EHTGDEDYDD DSPCLSELVQ GFLEDEVNNT VHDESRWCDN DSDSDSSSDS ERADLPDYAD DIAKILRNSL
101: REDNYGRMVL FHVAKAMEML SSSRSDQEQR AVLRRKLMSL LRELGHNAAI CKTKWKSSGG GLTAGNHEFI DVVYTPVATS SQTVRYIVDI DFKSHFQVAR
201: PTVQYARVLQ SLPTIFVGRG EDLKRILRLV CDAARISLKS CGLTLPPWRK NRYMQTRWLG SYKRTVNLTP SSRAVNTVVC RAIGFDNAVG GGRLFVRTR

Best Arabidopsis Sequence Match ( AT3G07350.1 )
(BLAST)

001: MGFSRAKRVT DPLAEEVRAR LVGCSFSSGS EHTGDGIEDY EDDDSPCLSD LVQGFLEDEV DTVDDESCWC DQDSGSDSDS DSELGELPDF ADDIAKLLRN
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR

Arabidopsis Description

F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.