Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g113740.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07350.1 | Solyc03g113740.2.1 | AT3G48150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400008686 | Potato | cytosol | 45.83 | 36.13 |
| Bra040373.1-P | Field mustard | plastid | 27.78 | 31.25 |
| Solyc06g007580.1.1 | Tomato | nucleus | 37.04 | 26.76 |
| Solyc06g083160.1.1 | Tomato | nucleus | 33.8 | 24.91 |
| Bra029641.1-P | Field mustard | nucleus | 33.8 | 24.33 |
| CDY28060 | Canola | cytosol, nucleus, plastid | 33.8 | 24.33 |
| CDY35924 | Canola | nucleus | 33.33 | 24.0 |
| AT3G07350.1 | Thale cress | nucleus | 31.02 | 22.48 |
| Bra013223.1-P | Field mustard | nucleus | 28.7 | 21.99 |
| CDY52283 | Canola | nucleus | 28.24 | 21.63 |
| VIT_00s0337g00040.t01 | Wine grape | cytosol | 28.24 | 21.63 |
| CDY15101 | Canola | nucleus | 27.78 | 21.58 |
| CDY60822 | Canola | nucleus | 29.63 | 21.4 |
| AT3G25240.1 | Thale cress | cytosol | 27.78 | 21.35 |
| CDY34904 | Canola | nucleus | 29.63 | 21.19 |
| KRH07392 | Soybean | nucleus | 28.7 | 20.74 |
| TraesCS4D01G188800.1 | Wheat | mitochondrion | 26.85 | 19.4 |
| Solyc06g054640.1.1 | Tomato | cytosol | 19.44 | 18.92 |
| TraesCS4B01G187500.1 | Wheat | mitochondrion | 25.46 | 18.39 |
| KRH46613 | Soybean | mitochondrion, nucleus | 24.07 | 18.25 |
| HORVU4Hr1G054810.1 | Barley | mitochondrion | 24.07 | 17.75 |
| TraesCS3B01G456400.1 | Wheat | cytosol | 23.15 | 17.36 |
| TraesCS3D01G416400.1 | Wheat | cytosol | 23.15 | 17.12 |
| TraesCS4A01G116900.1 | Wheat | plastid | 25.0 | 16.56 |
| Os01t0915000-01 | Rice | cytosol | 22.22 | 16.38 |
| TraesCS3A01G420900.1 | Wheat | cytosol | 21.76 | 16.21 |
| GSMUA_Achr6P21070_001 | Banana | cytosol | 22.22 | 16.11 |
| Os11t0437600-01 | Rice | plastid | 22.69 | 16.01 |
| EES04096 | Sorghum | cytosol | 21.76 | 15.88 |
| Solyc03g006410.2.1 | Tomato | cytosol | 22.22 | 15.79 |
| Zm00001d042376_P001 | Maize | cytosol | 20.83 | 15.31 |
| Zm00001d012069_P001 | Maize | mitochondrion | 20.37 | 15.28 |
| Solyc02g078160.2.1 | Tomato | nucleus | 21.3 | 15.23 |
| Solyc11g012120.1.1 | Tomato | cytosol | 19.91 | 14.48 |
| Solyc06g005480.2.1 | Tomato | cytosol | 19.91 | 13.78 |
| Solyc02g078150.2.1 | Tomato | nucleus | 18.98 | 13.31 |
| HORVU3Hr1G093260.1 | Barley | plastid | 24.07 | 12.84 |
| Solyc09g082980.2.1 | Tomato | nucleus | 22.69 | 12.31 |
| Solyc06g053910.2.1 | Tomato | cytosol, plastid | 21.76 | 12.08 |
| Solyc07g053900.2.1 | Tomato | cytosol | 17.59 | 11.88 |
| Solyc11g042630.1.1 | Tomato | cytosol | 15.28 | 11.62 |
| Solyc09g065760.2.1 | Tomato | cytosol, plastid | 20.37 | 10.11 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 7.87 | 8.17 |
Protein Annotations
| EnsemblPlants:Solyc09g057760.2.1 | EnsemblPlantsGene:Solyc09g057760.2 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF4 | PFAM:PF04720 |
| SEG:seg | TIGRFAMs:TIGR01615 | UniParc:UPI000276B549 | UniProt:K4CTG6 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr9:+:50493694..50495979
Molecular Weight (calculated)
23729.8 Da
IEP (calculated)
8.395
GRAVY (calculated)
-0.289
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MYDSRQVIED VTIPVLYNIE LDLFQNSLST VVTDALELFS FLNYNKSILR QSVMKYLRDF GYNAAICKTK WGSSGGVTSG NYEFIDVIRS DSSNQMINHY
101: IIDLDFAAEF EIARPTNYYK RMLQSLRKVP ASRNSSTQQQ LKVAASISPS PIVRRPASLA GEATTPTNNP VSPSGSGSLQ QQAAATRGRE ISATSSSATA
201: IAVSSSDEVR DARNLH
101: IIDLDFAAEF EIARPTNYYK RMLQSLRKVP ASRNSSTQQQ LKVAASISPS PIVRRPASLA GEATTPTNNP VSPSGSGSLQ QQAAATRGRE ISATSSSATA
201: IAVSSSDEVR DARNLH
001: MGFSRAKRVT DPLAEEVRAR LVGCSFSSGS EHTGDGIEDY EDDDSPCLSD LVQGFLEDEV DTVDDESCWC DQDSGSDSDS DSELGELPDF ADDIAKLLRN
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
Arabidopsis Description
F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.