Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G188800.1 | Wheat | mitochondrion | 90.78 | 88.96 |
| TraesCS4B01G187500.1 | Wheat | mitochondrion | 90.1 | 88.29 |
| TraesCS4A01G116900.1 | Wheat | plastid | 92.83 | 83.44 |
| Os11t0437600-01 | Rice | plastid | 61.77 | 59.15 |
| GSMUA_Achr6P21070_001 | Banana | cytosol | 46.08 | 45.3 |
| Bra040373.1-P | Field mustard | plastid | 25.26 | 38.54 |
| CDY60822 | Canola | nucleus | 34.81 | 34.11 |
| VIT_00s0337g00040.t01 | Wine grape | cytosol | 32.42 | 33.69 |
| CDY34904 | Canola | nucleus | 34.47 | 33.44 |
| CDY35924 | Canola | nucleus | 34.13 | 33.33 |
| Bra029641.1-P | Field mustard | nucleus | 33.79 | 33.0 |
| AT3G07350.1 | Thale cress | nucleus | 33.11 | 32.55 |
| CDY28060 | Canola | cytosol, nucleus, plastid | 33.11 | 32.33 |
| Solyc06g007580.1.1 | Tomato | nucleus | 32.42 | 31.77 |
| KRH46613 | Soybean | mitochondrion, nucleus | 30.38 | 31.23 |
| PGSC0003DMT400053173 | Potato | nucleus | 31.74 | 31.1 |
| AT3G25240.1 | Thale cress | cytosol | 29.69 | 30.96 |
| KRH07392 | Soybean | nucleus | 31.06 | 30.43 |
| CDY52283 | Canola | nucleus | 28.67 | 29.79 |
| Bra013223.1-P | Field mustard | nucleus | 28.67 | 29.79 |
| Solyc06g083160.1.1 | Tomato | nucleus | 29.69 | 29.69 |
| CDY15101 | Canola | nucleus | 27.65 | 29.14 |
| HORVU3Hr1G093260.1 | Barley | plastid | 39.25 | 28.4 |
| PGSC0003DMT400051812 | Potato | nucleus | 28.67 | 28.28 |
| PGSC0003DMT400008686 | Potato | cytosol | 24.23 | 25.91 |
| HORVU4Hr1G073730.1 | Barley | peroxisome, plastid | 27.65 | 25.71 |
| HORVU3Hr1G091440.2 | Barley | cytosol | 20.82 | 25.1 |
| Solyc09g057760.2.1 | Tomato | nucleus | 17.75 | 24.07 |
| HORVU1Hr1G076120.1 | Barley | nucleus | 22.87 | 23.84 |
| HORVU3Hr1G071220.1 | Barley | nucleus | 19.8 | 22.14 |
| HORVU5Hr1G105950.2 | Barley | plastid | 27.99 | 20.15 |
| HORVU3Hr1G115940.1 | Barley | plastid | 21.16 | 14.66 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G054810.1 | EnsemblPlantsGene:HORVU4Hr1G054810 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF9 | PFAM:PF04720 |
| SEG:seg | TIGRFAMs:TIGR01615 | UniParc:UPI000B465C79 | UniProt:A0A287P3U9 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr4H:-:458778494..458779375
Molecular Weight (calculated)
31362.0 Da
IEP (calculated)
8.463
GRAVY (calculated)
-0.244
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: PAAPMPRPRP KRATAPLDAA ARARLAALPR SADSSGSEHE AAALSSLVND YLLETDATVP SATLALEGSS DVDDEPNGDT SSTAAADMLA EIKNNLDPTD
101: SSADELRRRL VFAVADAMRG LDDLRPNQLA FRRTVLSRLR ERGHDAGLCK VRWDKSSGVT AGSYEYIDVV AGGGGTRYIV DVGFATEFDV ARSTEEYEAV
201: RTALPEVLIA RPEHLRQVVK LAASAARRSL KSSGLSVPPW RKRRFMMTKW LGPYRRTVSS IPALCSSGAV AVCQTIVGFA PQTTVGTSSG FWG
101: SSADELRRRL VFAVADAMRG LDDLRPNQLA FRRTVLSRLR ERGHDAGLCK VRWDKSSGVT AGSYEYIDVV AGGGGTRYIV DVGFATEFDV ARSTEEYEAV
201: RTALPEVLIA RPEHLRQVVK LAASAARRSL KSSGLSVPPW RKRRFMMTKW LGPYRRTVSS IPALCSSGAV AVCQTIVGFA PQTTVGTSSG FWG
001: MGFSRAKRVT DPLAEEVRAR LVGCSFSSGS EHTGDGIEDY EDDDSPCLSD LVQGFLEDEV DTVDDESCWC DQDSGSDSDS DSELGELPDF ADDIAKLLRN
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
Arabidopsis Description
F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.