CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX87879
CDY36901
CDY44976
CDY45633
CDY52982
CDY58069
CDY58070
CDY67259
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07350.1	CDX87879	AT1G52240.1	21798944
AT3G07350.1	CDY45633	AT1G52240.1	21798944
AT3G07350.1	CDY52982	AT1G52240.1	21798944
AT3G07350.1	CDY67259	AT1G52240.1	21798944
AT3G07350.1	CDY36901	AT3G48150.1	21798944
AT3G07350.1	CDY44976	AT3G48150.1	21798944
AT3G07350.1	CDY58069	AT3G48150.1	21798944
AT3G07350.1	CDY58070	AT3G48150.1	21798944
AT3G07350.1	CDY70805	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029641.1-P	Field mustard	nucleus	94.67	94.67
CDY28060	Canola	cytosol, nucleus, plastid	94.33	94.33
AT3G07350.1	Thale cress	nucleus	83.67	84.23
CDY60822	Canola	nucleus	83.67	83.95
CDY34904	Canola	nucleus	83.0	82.45
VIT_00s0337g00040.t01	Wine grape	cytosol	47.0	50.0
CDY52283	Canola	nucleus	46.0	48.94
Solyc06g007580.1.1	Tomato	nucleus	47.67	47.83
PGSC0003DMT400051812	Potato	nucleus	46.67	47.14
PGSC0003DMT400053173	Potato	nucleus	46.67	46.82
CDY15101	Canola	nucleus	43.33	46.76
Solyc06g083160.1.1	Tomato	nucleus	45.33	46.42
KRH07392	Soybean	nucleus	43.67	43.81
KRH46613	Soybean	mitochondrion, nucleus	40.67	42.81
PGSC0003DMT400008686	Potato	cytosol	38.0	41.61
GSMUA_Achr6P21070_001	Banana	cytosol	35.0	35.23
Os01t0915000-01	Rice	cytosol	33.67	34.47
HORVU4Hr1G054810.1	Barley	mitochondrion	33.33	34.13
TraesCS4D01G188800.1	Wheat	mitochondrion	34.0	34.11
Zm00001d042376_P001	Maize	cytosol	33.33	34.01
Os11t0437600-01	Rice	plastid	34.67	33.99
EES04096	Sorghum	cytosol	33.33	33.78
Zm00001d012069_P001	Maize	mitochondrion	32.0	33.33
Solyc09g057760.2.1	Tomato	nucleus	24.0	33.33
TraesCS3B01G456400.1	Wheat	cytosol	32.0	33.33
TraesCS3D01G416400.1	Wheat	cytosol	32.0	32.88
TraesCS3A01G420900.1	Wheat	cytosol	31.67	32.76
TraesCS4B01G187500.1	Wheat	mitochondrion	32.33	32.44
TraesCS4A01G116900.1	Wheat	plastid	33.67	30.98
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	21.0	30.29
CDY21027	Canola	cytosol	27.67	28.14
CDY53353	Canola	mitochondrion	27.0	27.65
CDY31234	Canola	cytosol	27.0	27.55
CDY30048	Canola	mitochondrion	26.33	26.78
CDY07644	Canola	cytosol	25.67	25.58
CDY24955	Canola	cytosol	25.67	25.5
CDY18366	Canola	cytosol	25.33	25.33
CDX93300	Canola	cytosol	25.0	25.0
HORVU3Hr1G093260.1	Barley	plastid	33.67	24.94
CDX92970	Canola	cytosol	27.33	24.62
CDX88344	Canola	cytosol	21.0	23.77
CDX87538	Canola	nucleus	20.33	23.74
CDX94877	Canola	cytosol	27.33	23.63
CDY29750	Canola	nucleus, plastid	27.67	23.45
CDX88346	Canola	nucleus	20.0	23.35
CDY16266	Canola	nucleus	27.67	23.25
CDX87540	Canola	cytosol	20.0	22.81
CDX87539	Canola	nucleus	20.33	22.76
CDY14428	Canola	cytosol	23.33	22.51
CDY07696	Canola	cytosol	23.33	22.44
CDY10330	Canola	cytosol	27.33	22.4
CDX88345	Canola	nucleus	20.0	22.39
CDY10329	Canola	plastid	26.33	20.9
CDX81975	Canola	nucleus	20.0	20.27
CDY05782	Canola	nucleus	19.67	19.87
CDX92863	Canola	nucleus	19.33	19.66
CDY29898	Canola	nucleus	19.33	19.66
CDY13861	Canola	nucleus	19.33	19.59
CDY31947	Canola	nucleus	19.33	19.53
CDY49659	Canola	nucleus	18.67	18.73
CDY18979	Canola	nucleus	18.67	18.73

Protein Annotations

EnsemblPlants:CDY35924	EnsemblPlantsGene:GSBRNA2T00059476001	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF4	PFAM:PF04720
ProteinID:CDY35924	ProteinID:CDY35924.1	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI0004EDDDFE	UniProt:A0A078HES5
MapMan:35.2	:	:	:	:	:

Description

BnaA05g30260DBnaA05g30260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HES5]

Coordinates

chrLK032364:+:9607..10509

Molecular Weight (calculated)

33545.5 Da

IEP (calculated)

6.907

GRAVY (calculated)

-0.426

Length

300 amino acids

Sequence
(BLAST)

001: MGFSRAKRVT DPLADEARAR LVGCSFSSGS EHTGDGIDDY DDDSPCLSDL VQGFLEDEAN QNVNEEPRWC DSDSESDSDS DSERVELPDF AEDIVKILRN
101: SLSEDNYGRM VLFHVARAME MLPSLGSDQE QRAVSRRKVM SILRGFGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPAAA TSSQTVRYIV DLDFASRFQI
201: ARPTPQYSRV LQSLPAVFVG RVDDLKRILR LVCDAARLSL RSRGLTLPPW RKNRYMQTRW LGSYKRTVNL TPSSSAVNTV MCRAVGFDNA VGDRLFVRTR

Best Arabidopsis Sequence Match ( AT3G07350.1 )
(BLAST)

001: MGFSRAKRVT DPLAEEVRAR LVGCSFSSGS EHTGDGIEDY EDDDSPCLSD LVQGFLEDEV DTVDDESCWC DQDSGSDSDS DSELGELPDF ADDIAKLLRN
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR

Arabidopsis Description

F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.