Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g113740.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07350.1 | Solyc03g113740.2.1 | AT3G48150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400053173 | Potato | nucleus | 93.65 | 93.65 |
| Solyc06g083160.1.1 | Tomato | nucleus | 64.88 | 66.21 |
| Bra040373.1-P | Field mustard | plastid | 35.12 | 54.69 |
| VIT_00s0337g00040.t01 | Wine grape | cytosol | 51.51 | 54.61 |
| Bra029641.1-P | Field mustard | nucleus | 48.16 | 48.0 |
| CDY35924 | Canola | nucleus | 47.83 | 47.67 |
| AT3G07350.1 | Thale cress | nucleus | 46.82 | 46.98 |
| CDY28060 | Canola | cytosol, nucleus, plastid | 46.82 | 46.67 |
| AT3G25240.1 | Thale cress | cytosol | 43.81 | 46.62 |
| CDY15101 | Canola | nucleus | 43.14 | 46.4 |
| CDY60822 | Canola | nucleus | 46.15 | 46.15 |
| CDY52283 | Canola | nucleus | 43.14 | 45.74 |
| CDY34904 | Canola | nucleus | 46.15 | 45.7 |
| Bra013223.1-P | Field mustard | nucleus | 42.47 | 45.04 |
| KRH07392 | Soybean | nucleus | 44.48 | 44.48 |
| KRH46613 | Soybean | mitochondrion, nucleus | 41.81 | 43.86 |
| Solyc09g057760.2.1 | Tomato | nucleus | 26.76 | 37.04 |
| GSMUA_Achr6P21070_001 | Banana | cytosol | 36.79 | 36.91 |
| Os01t0915000-01 | Rice | cytosol | 33.78 | 34.47 |
| TraesCS3B01G456400.1 | Wheat | cytosol | 32.11 | 33.33 |
| Zm00001d042376_P001 | Maize | cytosol | 32.78 | 33.33 |
| TraesCS3D01G416400.1 | Wheat | cytosol | 32.11 | 32.88 |
| TraesCS4D01G188800.1 | Wheat | mitochondrion | 32.78 | 32.78 |
| EES04096 | Sorghum | cytosol | 32.44 | 32.77 |
| TraesCS3A01G420900.1 | Wheat | cytosol | 31.77 | 32.76 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 22.74 | 32.69 |
| Os11t0437600-01 | Rice | plastid | 33.44 | 32.68 |
| Zm00001d012069_P001 | Maize | mitochondrion | 31.44 | 32.64 |
| HORVU4Hr1G054810.1 | Barley | mitochondrion | 31.77 | 32.42 |
| TraesCS4B01G187500.1 | Wheat | mitochondrion | 31.44 | 31.44 |
| Solyc11g012120.1.1 | Tomato | cytosol | 30.1 | 30.3 |
| TraesCS4A01G116900.1 | Wheat | plastid | 32.11 | 29.45 |
| Solyc06g054640.1.1 | Tomato | cytosol | 20.74 | 27.93 |
| HORVU3Hr1G093260.1 | Barley | plastid | 32.78 | 24.2 |
| Solyc02g078150.2.1 | Tomato | nucleus | 23.75 | 23.05 |
| Solyc02g078160.2.1 | Tomato | nucleus | 21.74 | 21.52 |
| Solyc03g006410.2.1 | Tomato | cytosol | 21.4 | 21.05 |
| Solyc06g053910.2.1 | Tomato | cytosol, plastid | 26.76 | 20.57 |
| Solyc06g005480.2.1 | Tomato | cytosol | 20.74 | 19.87 |
| Solyc09g082980.2.1 | Tomato | nucleus | 26.42 | 19.85 |
| Solyc11g042630.1.1 | Tomato | cytosol | 18.39 | 19.37 |
| Solyc07g053900.2.1 | Tomato | cytosol | 20.4 | 19.06 |
| Solyc09g065760.2.1 | Tomato | cytosol, plastid | 24.08 | 16.55 |
Protein Annotations
| EnsemblPlants:Solyc06g007580.1.1 | EnsemblPlantsGene:Solyc06g007580.1 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF4 | PFAM:PF04720 |
| TIGRFAMs:TIGR01615 | UniParc:UPI0002766316 | UniProt:K4C3D9 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr6:+:1578789..1579688
Molecular Weight (calculated)
33499.5 Da
IEP (calculated)
7.819
GRAVY (calculated)
-0.457
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGNGRMKRV TDPLNDKVKA RIVGADLREL GYISSGSEHS ADADTDVASP SFSGLVFGFP DDLDQNQSSE NDNSDTELDE SSVDNVPEMI FQSDTDLFRN
101: VLCSHVFKAL EVYSCLKLNK SVLRRNVMLC LRDFGYNAAV CKAKWESSGG LTAGNYEFID VVRSDAVNCQ TRYFVDLDFA AEFEIARPTN SYERLSQSLP
201: KVFVGKSEEL KQILRTMSDA ARRSLKSRDL HLPPWRKHRF MQNKWLGPYK RTSNITPSTN TPAFLLPPSN QAYTVKCRSV GFDTAVHGGL WLPAATRTR
101: VLCSHVFKAL EVYSCLKLNK SVLRRNVMLC LRDFGYNAAV CKAKWESSGG LTAGNYEFID VVRSDAVNCQ TRYFVDLDFA AEFEIARPTN SYERLSQSLP
201: KVFVGKSEEL KQILRTMSDA ARRSLKSRDL HLPPWRKHRF MQNKWLGPYK RTSNITPSTN TPAFLLPPSN QAYTVKCRSV GFDTAVHGGL WLPAATRTR
001: MGFSRAKRVT DPLAEEVRAR LVGCSFSSGS EHTGDGIEDY EDDDSPCLSD LVQGFLEDEV DTVDDESCWC DQDSGSDSDS DSELGELPDF ADDIAKLLRN
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
Arabidopsis Description
F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.