Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g113740.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07350.1 | Solyc03g113740.2.1 | AT3G48150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400051812 | Potato | nucleus | 93.52 | 92.26 |
| Solyc06g007580.1.1 | Tomato | nucleus | 66.21 | 64.88 |
| Bra040373.1-P | Field mustard | plastid | 33.45 | 51.04 |
| VIT_00s0337g00040.t01 | Wine grape | cytosol | 48.46 | 50.35 |
| Bra029641.1-P | Field mustard | nucleus | 46.76 | 45.67 |
| CDY35924 | Canola | nucleus | 46.42 | 45.33 |
| AT3G07350.1 | Thale cress | nucleus | 45.73 | 44.97 |
| CDY60822 | Canola | nucleus | 45.39 | 44.48 |
| CDY28060 | Canola | cytosol, nucleus, plastid | 45.05 | 44.0 |
| CDY15101 | Canola | nucleus | 41.3 | 43.53 |
| KRH07392 | Soybean | nucleus | 44.37 | 43.48 |
| CDY34904 | Canola | nucleus | 44.71 | 43.38 |
| CDY52283 | Canola | nucleus | 41.3 | 42.91 |
| Bra013223.1-P | Field mustard | nucleus | 41.3 | 42.91 |
| AT3G25240.1 | Thale cress | cytosol | 40.96 | 42.7 |
| KRH46613 | Soybean | mitochondrion, nucleus | 40.61 | 41.75 |
| Solyc09g057760.2.1 | Tomato | nucleus | 24.91 | 33.8 |
| GSMUA_Achr6P21070_001 | Banana | cytosol | 33.45 | 32.89 |
| Solyc11g012120.1.1 | Tomato | cytosol | 31.06 | 30.64 |
| TraesCS3B01G456400.1 | Wheat | cytosol | 29.69 | 30.21 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 21.16 | 29.81 |
| TraesCS3D01G416400.1 | Wheat | cytosol | 29.69 | 29.79 |
| Os11t0437600-01 | Rice | plastid | 31.06 | 29.74 |
| HORVU4Hr1G054810.1 | Barley | mitochondrion | 29.69 | 29.69 |
| Os01t0915000-01 | Rice | cytosol | 29.69 | 29.69 |
| Zm00001d012069_P001 | Maize | mitochondrion | 29.01 | 29.51 |
| TraesCS4D01G188800.1 | Wheat | mitochondrion | 30.03 | 29.43 |
| TraesCS3A01G420900.1 | Wheat | cytosol | 28.67 | 28.97 |
| Zm00001d042376_P001 | Maize | cytosol | 29.01 | 28.91 |
| TraesCS4B01G187500.1 | Wheat | mitochondrion | 29.35 | 28.76 |
| EES04096 | Sorghum | cytosol | 29.01 | 28.72 |
| Solyc06g054640.1.1 | Tomato | cytosol | 21.16 | 27.93 |
| TraesCS4A01G116900.1 | Wheat | plastid | 30.38 | 27.3 |
| Solyc02g078150.2.1 | Tomato | nucleus | 23.21 | 22.08 |
| Solyc06g053910.2.1 | Tomato | cytosol, plastid | 29.01 | 21.85 |
| HORVU3Hr1G093260.1 | Barley | plastid | 29.35 | 21.23 |
| Solyc02g078160.2.1 | Tomato | nucleus | 21.5 | 20.86 |
| Solyc09g082980.2.1 | Tomato | nucleus | 28.33 | 20.85 |
| Solyc03g006410.2.1 | Tomato | cytosol | 21.16 | 20.39 |
| Solyc06g005480.2.1 | Tomato | cytosol | 21.5 | 20.19 |
| Solyc11g042630.1.1 | Tomato | cytosol | 17.75 | 18.31 |
| Solyc07g053900.2.1 | Tomato | cytosol | 19.11 | 17.5 |
| Solyc09g065760.2.1 | Tomato | cytosol, plastid | 24.91 | 16.78 |
Protein Annotations
| EnsemblPlants:Solyc06g083160.1.1 | EnsemblPlantsGene:Solyc06g083160.1 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF4 | PFAM:PF04720 |
| SEG:seg | TIGRFAMs:TIGR01615 | UniParc:UPI0002765BED | UniProt:K4CAH1 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr6:-:48694247..48695128
Molecular Weight (calculated)
33111.2 Da
IEP (calculated)
8.576
GRAVY (calculated)
-0.460
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGFRRMKRV TDPLDEKMKA RIVGSSGSEH SAHADDDDIA SPSFSDLVFG DLENTAGDET PENDSDSELD VSMCDSIDRI EIMPSPVFRS EFDLFRNVIV
101: SCATKGLEVF SCFKSNKSML QRNVMAYLRN FGYNAAVCKT KWEKSGGLAA GNYEFIDITK SDSTTRYFVD LDFKAEFEIA RPTIQYERLL QSLPNIFVGK
201: SEELKQILRA MSDAARRSLK SRGLTFPPWR KHRFMQNKWF SSYRRTTNII PTASSPAWFS PSKETNAAKC RTVGFHTTAV NGCLLFPATT RTR
101: SCATKGLEVF SCFKSNKSML QRNVMAYLRN FGYNAAVCKT KWEKSGGLAA GNYEFIDITK SDSTTRYFVD LDFKAEFEIA RPTIQYERLL QSLPNIFVGK
201: SEELKQILRA MSDAARRSLK SRGLTFPPWR KHRFMQNKWF SSYRRTTNII PTASSPAWFS PSKETNAAKC RTVGFHTTAV NGCLLFPATT RTR
001: MGFSRAKRVT DPLAEEVRAR LVGCSFSSGS EHTGDGIEDY EDDDSPCLSD LVQGFLEDEV DTVDDESCWC DQDSGSDSDS DSELGELPDF ADDIAKLLRN
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
Arabidopsis Description
F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.