Factsheet for Solyc06g053910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g067890.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22970.1	Solyc01g067890.2.1	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041951	Potato	cytosol	89.97	94.59
Solyc09g082980.2.1	Tomato	nucleus	67.87	66.33
KRH34359	Soybean	plastid	59.64	59.95
VIT_05s0020g04500.t01	Wine grape	nucleus	59.38	59.84
KRG92439	Soybean	plastid	57.58	57.0
Bra001897.1-P	Field mustard	cytosol	46.53	54.35
CDX92970	Canola	cytosol	46.27	54.05
Bra036877.1-P	Field mustard	cytosol, plastid	49.1	53.95
AT3G22970.1	Thale cress	plastid	51.16	53.78
CDY29750	Canola	nucleus, plastid	48.84	53.67
CDY16266	Canola	nucleus	49.1	53.5
AT4G14620.1	Thale cress	cytosol	46.79	53.37
CDX94877	Canola	cytosol	47.3	53.03
Bra033896.1-P	Field mustard	cytosol	49.1	52.04
CDY10330	Canola	cytosol	48.59	51.64
KRH69065	Soybean	cytosol	48.33	51.37
GSMUA_Achr3P15230_001	Banana	cytosol	43.96	50.74
KRH31637	Soybean	cytosol	49.87	50.65
GSMUA_Achr8P26930_001	Banana	cytosol	44.73	49.29
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	43.96	47.63
CDY10329	Canola	plastid	46.27	47.62
GSMUA_Achr4P14880_001	Banana	mitochondrion	31.88	46.97
GSMUA_Achr8P20590_001	Banana	plastid	43.7	46.83
GSMUA_Achr8P04470_001	Banana	cytosol	42.93	45.38
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	42.67	43.46
EER91615	Sorghum	mitochondrion	31.62	41.98
Zm00001d032955_P001	Maize	cytosol, mitochondrion, nucleus, plastid	32.13	41.67
Solyc09g065760.2.1	Tomato	cytosol, plastid	46.27	41.38
TraesCS4B01G278500.1	Wheat	peroxisome, plastid	32.39	40.51
Os03t0162500-01	Rice	plastid	31.88	40.39
TraesCS4D01G277000.1	Wheat	peroxisome, plastid	32.13	40.19
TraesCS5B01G442200.1	Wheat	plastid	38.56	40.0
EER95459	Sorghum	plastid	30.59	39.8
TraesCS5A01G439200.1	Wheat	plastid	38.3	39.73
HORVU4Hr1G073730.1	Barley	peroxisome, plastid	32.13	39.68
TraesCS5D01G446400.1	Wheat	plastid	38.56	39.37
TraesCS4A01G025500.1	Wheat	peroxisome, plastid	31.88	39.37
Zm00001d027763_P001	Maize	plastid	30.33	39.33
GSMUA_Achr9P25590_001	Banana	plastid	41.13	39.31
Os10t0417800-01	Rice	plastid	30.33	39.2
Os03t0796600-01	Rice	cytosol, nucleus, plastid	38.82	37.28
HORVU5Hr1G105950.2	Barley	plastid	38.3	36.61
EER93295	Sorghum	plastid	36.76	36.39
Zm00001d034444_P002	Maize	plastid	37.28	35.8
Zm00001d018962_P001	Maize	mitochondrion, plastid	35.22	35.77
Zm00001d007820_P002	Maize	plastid	35.22	34.16
Solyc06g054640.1.1	Tomato	cytosol	19.28	33.78
EER98072	Sorghum	cytosol, plastid	35.99	29.54
Solyc06g083160.1.1	Tomato	nucleus	21.85	29.01
Solyc06g007580.1.1	Tomato	nucleus	20.57	26.76
Solyc11g012120.1.1	Tomato	cytosol	20.31	26.6
Solyc02g078160.2.1	Tomato	nucleus	19.54	25.17
Solyc06g005480.2.1	Tomato	cytosol	19.79	24.68
Solyc03g006410.2.1	Tomato	cytosol	19.02	24.34
Solyc02g078150.2.1	Tomato	nucleus	18.25	23.05
Solyc09g057760.2.1	Tomato	nucleus	12.08	21.76
Solyc07g053900.2.1	Tomato	cytosol	17.22	20.94
Solyc11g042630.1.1	Tomato	cytosol	15.17	20.77

Protein Annotations

EnsemblPlants:Solyc06g053910.2.1	EnsemblPlantsGene:Solyc06g053910.2	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF19	PFAM:PF04720
SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI000276596C	UniProt:K4C678	MapMan:35.2	:

Description

No Description!

Coordinates

chr6:-:36804547..36806703

Molecular Weight (calculated)

43282.2 Da

IEP (calculated)

5.441

GRAVY (calculated)

-0.461

Length

389 amino acids

Sequence
(BLAST)

001: MVTLILFLFN YANNSKEHMP FPMKVQPIDS STYRESIKND AVKPLLKARI KKFFDRPFPS VLRISSAAEK PGAAGAANDG AAAEFEPNSV SLDKLVQNFI
101: EENNDKPSAA RFGRKCNCFN GNNDSSDDEF DFDSVTNSSS FGDSSDTLKS LIPCASVTER NLLAETSKIV EENKSCKRKD DLRKIVTDEL LALGYKASIC
201: KSKWEKASST PAGEYEYIDV IEEGERVILD VDFRSEFEVA RSTGRYKSIL QLLPFIFVGK ADRLVQIVSI VSEAARQSLK KKGMHIAPWR NPEYMKAKWL
301: SSYTRVTSAV ESSNAAAEIT ESESEYGELD LIFSDKTVPL DSDPTKNPLE NTSGEEEKPV MMTWQPPAVK PKKPKVVVTG LASLLREKP

Best Arabidopsis Sequence Match ( AT3G22970.1 )
(BLAST)

001: MPFTMKIQPI DIDSSPTVAR AESGNKPVLK SRLKRLFDRP FTNVLRNSTT TTTEKPFVVT GGEVQCGGVV TEFEPSSVCL AKMVQNFIEE NNEKQAKCGR
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP

Arabidopsis Description

At3g22970 [Source:UniProtKB/TrEMBL;Acc:Q9LIJ8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.