Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G22970.1 | CDX90583 | AT4G15560.1 | 24104567 |
| AT3G22970.1 | CDY09752 | AT4G15560.1 | 24104567 |
| AT3G22970.1 | CDY52177 | AT4G15560.1 | 24104567 |
| AT3G22970.1 | CDY64791 | AT4G15560.1 | 24104567 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92970 | Canola | cytosol | 91.07 | 94.89 |
| CDY10330 | Canola | cytosol | 79.25 | 75.14 |
| AT3G22970.1 | Thale cress | plastid | 80.12 | 75.14 |
| CDY10329 | Canola | plastid | 74.93 | 68.78 |
| CDY29750 | Canola | nucleus, plastid | 64.27 | 62.99 |
| CDY16266 | Canola | nucleus | 64.55 | 62.75 |
| KRH34359 | Soybean | plastid | 63.11 | 56.59 |
| KRG92439 | Soybean | plastid | 62.82 | 55.47 |
| VIT_05s0020g04500.t01 | Wine grape | nucleus | 60.23 | 54.15 |
| KRH69065 | Soybean | cytosol | 55.62 | 52.73 |
| KRH31637 | Soybean | cytosol | 56.77 | 51.44 |
| PGSC0003DMT400041951 | Potato | cytosol | 53.03 | 49.73 |
| CDX93300 | Canola | cytosol | 42.94 | 49.67 |
| CDY18366 | Canola | cytosol | 42.65 | 49.33 |
| Solyc09g082980.2.1 | Tomato | nucleus | 56.48 | 49.25 |
| PGSC0003DMT400015576 | Potato | cytosol, plastid | 56.2 | 49.24 |
| GSMUA_Achr3P15230_001 | Banana | cytosol | 47.55 | 48.96 |
| CDY07696 | Canola | cytosol | 43.8 | 48.72 |
| CDY14428 | Canola | cytosol | 43.23 | 48.23 |
| Solyc06g053910.2.1 | Tomato | cytosol, plastid | 53.03 | 47.3 |
| GSMUA_Achr4P21100_001 | Banana | cytosol, plastid | 47.26 | 45.68 |
| GSMUA_Achr8P26930_001 | Banana | cytosol | 46.11 | 45.33 |
| GSMUA_Achr4P14880_001 | Banana | mitochondrion | 34.01 | 44.7 |
| GSMUA_Achr8P04470_001 | Banana | cytosol | 46.11 | 43.48 |
| GSMUA_Achr8P20590_001 | Banana | plastid | 44.38 | 42.42 |
| GSMUA_Achr9P10660_001 | Banana | cytosol, plastid | 44.96 | 40.84 |
| Zm00001d032955_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 34.58 | 40.0 |
| EER91615 | Sorghum | mitochondrion | 33.72 | 39.93 |
| Os10t0417800-01 | Rice | plastid | 34.01 | 39.2 |
| GSMUA_Achr9P25590_001 | Banana | plastid | 44.96 | 38.33 |
| EER95459 | Sorghum | plastid | 32.85 | 38.13 |
| Os03t0162500-01 | Rice | plastid | 33.43 | 37.78 |
| Zm00001d027763_P001 | Maize | plastid | 31.99 | 37.0 |
| TraesCS4D01G277000.1 | Wheat | peroxisome, plastid | 32.85 | 36.66 |
| TraesCS4B01G278500.1 | Wheat | peroxisome, plastid | 32.85 | 36.66 |
| TraesCS4A01G025500.1 | Wheat | peroxisome, plastid | 33.14 | 36.51 |
| HORVU4Hr1G073730.1 | Barley | peroxisome, plastid | 32.56 | 35.87 |
| TraesCS5B01G442200.1 | Wheat | plastid | 38.33 | 35.47 |
| TraesCS5A01G439200.1 | Wheat | plastid | 37.75 | 34.93 |
| EER93295 | Sorghum | plastid | 39.19 | 34.61 |
| TraesCS5D01G446400.1 | Wheat | plastid | 37.75 | 34.38 |
| Zm00001d034444_P002 | Maize | plastid | 39.48 | 33.83 |
| Zm00001d018962_P001 | Maize | mitochondrion, plastid | 37.18 | 33.68 |
| Os03t0796600-01 | Rice | cytosol, nucleus, plastid | 38.62 | 33.09 |
| HORVU5Hr1G105950.2 | Barley | plastid | 37.75 | 32.19 |
| Zm00001d007820_P002 | Maize | plastid | 35.73 | 30.92 |
| CDY35924 | Canola | nucleus | 23.63 | 27.33 |
| CDX87539 | Canola | nucleus | 20.75 | 26.87 |
| CDX88346 | Canola | nucleus | 19.88 | 26.85 |
| CDY60822 | Canola | nucleus | 23.05 | 26.76 |
| CDY28060 | Canola | cytosol, nucleus, plastid | 23.05 | 26.67 |
| EER98072 | Sorghum | cytosol, plastid | 36.31 | 26.58 |
| CDX88345 | Canola | nucleus | 20.46 | 26.49 |
| CDY34904 | Canola | nucleus | 23.05 | 26.49 |
| CDY52283 | Canola | nucleus | 21.33 | 26.24 |
| CDX87540 | Canola | cytosol | 19.88 | 26.24 |
| CDX87538 | Canola | nucleus | 19.31 | 26.07 |
| CDX88344 | Canola | cytosol | 19.88 | 26.04 |
| CDY15101 | Canola | nucleus | 20.75 | 25.9 |
| CDY07644 | Canola | cytosol | 21.61 | 24.92 |
| CDY24955 | Canola | cytosol | 21.04 | 24.17 |
| CDY30048 | Canola | mitochondrion | 19.6 | 23.05 |
| CDY53353 | Canola | mitochondrion | 19.31 | 22.87 |
| CDY21027 | Canola | cytosol | 18.73 | 22.03 |
| CDY31234 | Canola | cytosol | 18.16 | 21.43 |
| CDY13861 | Canola | nucleus | 18.16 | 21.28 |
| CDX81975 | Canola | nucleus | 18.16 | 21.28 |
| CDY29898 | Canola | nucleus | 17.87 | 21.02 |
| CDY05782 | Canola | nucleus | 17.58 | 20.54 |
| CDY31947 | Canola | nucleus | 17.58 | 20.54 |
| CDX92863 | Canola | nucleus | 17.29 | 20.34 |
| CDY18979 | Canola | nucleus | 17.29 | 20.07 |
| CDY49659 | Canola | nucleus | 17.29 | 20.07 |
Protein Annotations
| EnsemblPlants:CDX94877 | EnsemblPlantsGene:GSBRNA2T00158421001 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF19 | PFAM:PF04720 |
| ProteinID:CDX94877 | ProteinID:CDX94877.1 | SEG:seg | TIGRFAMs:TIGR01615 | UniParc:UPI0004EEC334 | MapMan:35.2 |
Description
BnaC03g43110D
Coordinates
chrLK031885:-:1164422..1165783
Molecular Weight (calculated)
38381.5 Da
IEP (calculated)
4.922
GRAVY (calculated)
-0.370
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MPFTMKIQPI DIDSPAVAKP EATGKPVLKS RLKRLFDRPF RTATSEKPFT GGEAQSATEF EPSSVCLTKM VQNFIEENNE KQAKCGRNRC NCFNGSNNDS
101: SDDDESDLFA SDHLESLIPC ATVAESNLFA DVANIVDKNN KSVKRKDEMR KIVNEGLLSL NYDSSICKSK WDKSPSFPAG EYEYIDVIVG EERLMIDVDF
201: RSEFDIARQT SGYKALLQSL PFIFVGKSDR LSQIVALISE AAKLSMKKRG MHLPPWRKAE YMRSKWLSSY TRASGNAEEL PVAAAAAEME VDCADLELVF
301: EEKSLSPVVV KASSSLFPSV DGDGADAAVE REVKAVTGLA LLFKEKP
101: SDDDESDLFA SDHLESLIPC ATVAESNLFA DVANIVDKNN KSVKRKDEMR KIVNEGLLSL NYDSSICKSK WDKSPSFPAG EYEYIDVIVG EERLMIDVDF
201: RSEFDIARQT SGYKALLQSL PFIFVGKSDR LSQIVALISE AAKLSMKKRG MHLPPWRKAE YMRSKWLSSY TRASGNAEEL PVAAAAAEME VDCADLELVF
301: EEKSLSPVVV KASSSLFPSV DGDGADAAVE REVKAVTGLA LLFKEKP
001: MPFTMKIQPI DIDSSPTVAR AESGNKPVLK SRLKRLFDRP FTNVLRNSTT TTTEKPFVVT GGEVQCGGVV TEFEPSSVCL AKMVQNFIEE NNEKQAKCGR
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP
Arabidopsis Description
At3g22970 [Source:UniProtKB/TrEMBL;Acc:Q9LIJ8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.