Factsheet for Zm00001d032955_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d038170_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22970.1	Zm00001d038170_P001	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91615	Sorghum	mitochondrion	88.0	90.1
Os10t0417800-01	Rice	plastid	77.0	76.74
Zm00001d027763_P001	Maize	plastid	72.67	72.67
GSMUA_Achr8P20590_001	Banana	plastid	52.0	42.98
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	53.67	42.15
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	49.67	41.5
Zm00001d018962_P001	Maize	mitochondrion, plastid	49.33	38.64
Zm00001d007820_P002	Maize	plastid	50.0	37.41
AT2G38820.2	Thale cress	cytosol	38.33	37.1
Bra036877.1-P	Field mustard	cytosol, plastid	43.33	36.72
CDY29750	Canola	nucleus, plastid	43.33	36.72
GSMUA_Achr9P25590_001	Banana	plastid	49.33	36.36
Bra001897.1-P	Field mustard	cytosol	40.33	36.34
CDX92970	Canola	cytosol	40.33	36.34
Bra000098.1-P	Field mustard	cytosol	37.0	35.92
CDY18366	Canola	cytosol	35.67	35.67
CDX93300	Canola	cytosol	35.67	35.67
Bra017099.1-P	Field mustard	cytosol	35.67	35.67
CDY07696	Canola	cytosol	37.0	35.58
KRG95606	Soybean	cytosol	42.67	35.46
CDY14428	Canola	cytosol	36.67	35.37
CDY16266	Canola	nucleus	42.0	35.29
Zm00001d034444_P002	Maize	plastid	47.0	34.81
KRG92439	Soybean	plastid	45.33	34.61
Bra033896.1-P	Field mustard	cytosol	42.33	34.6
PGSC0003DMT400041951	Potato	cytosol	42.67	34.59
CDX94877	Canola	cytosol	40.0	34.58
VIT_05s0020g04500.t01	Wine grape	nucleus	44.33	34.46
AT3G54550.1	Thale cress	plastid	33.0	34.38
KRH71351	Soybean	cytosol	41.0	34.26
KRH34359	Soybean	plastid	44.0	34.11
PGSC0003DMT400015576	Potato	cytosol, plastid	45.0	34.09
AT4G14620.1	Thale cress	cytosol	37.67	33.14
KRH32089	Soybean	cytosol	37.33	33.04
AT3G22970.1	Thale cress	plastid	40.67	32.97
CDY10330	Canola	cytosol	40.0	32.79
VIT_00s0179g00360.t01	Wine grape	cytosol	43.33	32.75
Solyc09g082980.2.1	Tomato	nucleus	43.33	32.66
Solyc06g053910.2.1	Tomato	cytosol, plastid	41.67	32.13
KRH69065	Soybean	cytosol	38.67	31.69
CDY10329	Canola	plastid	39.67	31.48
KRH31637	Soybean	cytosol	39.33	30.81
Zm00001d042376_P001	Maize	cytosol	28.67	29.25
Zm00001d012069_P001	Maize	mitochondrion	28.0	29.17
Zm00001d043444_P001	Maize	nucleus	27.33	28.87
Zm00001d042631_P001	Maize	cytosol	20.33	28.64
PGSC0003DMT400049773	Potato	nucleus	39.33	27.19
Solyc09g065760.2.1	Tomato	cytosol, plastid	38.67	26.67
Zm00001d041955_P001	Maize	plastid	27.67	24.13
Zm00001d051691_P001	Maize	cytosol	22.33	21.34

Protein Annotations

EMBL:BT066932	EnsemblPlants:Zm00001d032955_P001	EnsemblPlants:Zm00001d032955_T001	EnsemblPlantsGene:Zm00001d032955	EntrezGene:100283833	InterPro:PDDEXK-like
PANTHER:PTHR31579	PANTHER:PTHR31579:SF8	PFAM:PF04720	ProteinID:ONM06396.1	SEG:seg	TIGRFAMs:TIGR01615
UniParc:UPI000195CB17	UniProt:C0PF63	MapMan:35.2	:	:	:

Description

Whole genome shotgun sequence of line PN40024 scaffold_179.assembly12x (Fragment)

Coordinates

chr1:-:244544978..244546492

Molecular Weight (calculated)

32361.0 Da

IEP (calculated)

6.513

GRAVY (calculated)

-0.487

Length

300 amino acids

Sequence
(BLAST)

001: MRAAPTDPPT APAKSMLRRL FDRQLLRISP AERLPSAGAG EKDEAEPSSV CLDGMVRSFM EDDVGSEKAA HGGRYCNCFH GGDNSDDEED DEAAAAASDV
101: AETIKGLVHC ATLRERNLLA DVCAHLERHR EAGARRRDLL RLVASSLRGA GHDASVCVSR WDKSPSHPVG EHAYIDVLLP AASDRGARER VLVDVDFRSA
201: FEVARPTKAY RALLQRLPAV FVGKDDRLRL LVAAAADAAR ASLKKRGLHL PPWRKPEYMR AKWLSPYHRE APVAEEAASA SADEDDGDGP GPGTGTGTAA

Best Arabidopsis Sequence Match ( AT2G38820.2 )
(BLAST)

001: MPLHMKIQPI DESDVSEEVP YPETMRQMPK SRLKRLFERQ FTNKNVSEKF TGSDVEAPLS RGNSGDFEPS SVCLAKMVLN FMEDNNGGEK QRCGRSRCNC
101: FSGSGTESSD DETECSSGEA CEILKSLVLC KSIRVRNLLT DVTKIAETSK NCKLKDGSCL KSVANGLVSL GYDAALCKSR WEKSPSCPAG EYEYVDVIMK
201: GERLLIDIDF KSKFEIARAT KTYKSMLQTL PYIFVGKADR LQKIIVLICK AAKQSLKKKG LHVPPWRRAE YVKSKWLSSH VRVDQNSNGE VKQESVEVIA
301: ESVSSIVFGV

Arabidopsis Description

Protein of unknown function (DUF506) [Source:TAIR;Acc:AT2G38820]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.