CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 1
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES19518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22970.1	EES19518	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032955_P001	Maize	cytosol, mitochondrion, nucleus, plastid	90.1	88.0
Os10t0417800-01	Rice	plastid	78.84	76.74
EER95459	Sorghum	plastid	73.72	72.24
GSMUA_Achr8P20590_001	Banana	plastid	51.54	41.6
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	53.92	41.36
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	50.51	41.23
AT2G38820.2	Thale cress	cytosol	39.25	37.1
Bra036877.1-P	Field mustard	cytosol, plastid	44.37	36.72
CDY29750	Canola	nucleus, plastid	44.03	36.44
Bra000098.1-P	Field mustard	cytosol	37.54	35.6
CDY07696	Canola	cytosol	37.88	35.58
CDX92970	Canola	cytosol	40.27	35.44
Bra001897.1-P	Field mustard	cytosol	40.27	35.44
CDX93300	Canola	cytosol	36.18	35.33
Bra017099.1-P	Field mustard	cytosol	36.18	35.33
CDY18366	Canola	cytosol	36.18	35.33
CDY16266	Canola	nucleus	43.0	35.29
KRG95606	Soybean	cytosol	43.34	35.18
AT3G54550.1	Thale cress	plastid	34.47	35.07
CDY14428	Canola	cytosol	36.86	34.73
GSMUA_Achr9P25590_001	Banana	plastid	48.12	34.64
PGSC0003DMT400041951	Potato	cytosol	43.0	34.05
CDX94877	Canola	cytosol	39.93	33.72
VIT_05s0020g04500.t01	Wine grape	nucleus	44.37	33.68
Bra033896.1-P	Field mustard	cytosol	41.98	33.52
KRH71351	Soybean	cytosol	40.96	33.43
KRG92439	Soybean	plastid	44.71	33.33
AT4G14620.1	Thale cress	cytosol	38.57	33.14
KRH34359	Soybean	plastid	43.34	32.82
PGSC0003DMT400015576	Potato	cytosol, plastid	44.03	32.58
EER93295	Sorghum	plastid	43.69	32.57
AT3G22970.1	Thale cress	plastid	40.61	32.16
KRH32089	Soybean	cytosol	37.2	32.15
VIT_00s0179g00360.t01	Wine grape	cytosol	43.34	31.99
CDY10330	Canola	cytosol	39.59	31.69
Solyc06g053910.2.1	Tomato	cytosol, plastid	41.98	31.62
Solyc09g082980.2.1	Tomato	nucleus	42.66	31.41
CDY10329	Canola	plastid	39.25	30.42
EER98072	Sorghum	cytosol, plastid	48.81	30.17
KRH69065	Soybean	cytosol	37.2	29.78
KRH31637	Soybean	cytosol	38.91	29.77
EES04096	Sorghum	cytosol	28.33	28.04
EES01469	Sorghum	nucleus	26.96	28.01
PGSC0003DMT400049773	Potato	nucleus	40.27	27.19
Solyc09g065760.2.1	Tomato	cytosol, plastid	39.59	26.67
EES19824	Sorghum	cytosol	25.26	24.58
OQU87982	Sorghum	cytosol	22.18	23.13
EES07354	Sorghum	cytosol	23.89	22.65

Protein Annotations

EnsemblPlants:EER91615	EnsemblPlantsGene:SORBI_3001G247400	EntrezGene:8064911	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF8
PFAM:PF04720	ProteinID:EER91615	ProteinID:EER91615.1	RefSeq:XP_002464617.1	SEG:seg	TIGRFAMs:TIGR01615
unigene:Sbi.11466	UniParc:UPI0001A82040	UniProt:C5X1K5	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr1:+:26256989..26258913

Molecular Weight (calculated)

31467.0 Da

IEP (calculated)

6.785

GRAVY (calculated)

-0.470

Length

293 amino acids

Sequence
(BLAST)

001: MRAAATDPPA RSMLKRLFDR QLLRISPADR LPSADAGEKD DAEPSSVCLD GMVRSFMEDG VGGGDKAGHG GRYCNCFHGG DNSDDEEDDE AAAASDVAET
101: IKGLVHCATL RERNLLADVC AHLERHRAAG ARRRDLLRLV ASSLRAAGHD AAVCVSRWDK SPSHPAGEHA YIDVLLPAAS DRGACERVLV DADFRSAFEV
201: ARPTKAYRAL LQRLPPVFVG KDDRLRLLVA AAAAAARASL RKRGLHLPPW RKPEYMRAKW LSPYEREAPP ADAAAGEEKD DGEGPGTGTG TAA

Best Arabidopsis Sequence Match ( AT2G38820.2 )
(BLAST)

001: MPLHMKIQPI DESDVSEEVP YPETMRQMPK SRLKRLFERQ FTNKNVSEKF TGSDVEAPLS RGNSGDFEPS SVCLAKMVLN FMEDNNGGEK QRCGRSRCNC
101: FSGSGTESSD DETECSSGEA CEILKSLVLC KSIRVRNLLT DVTKIAETSK NCKLKDGSCL KSVANGLVSL GYDAALCKSR WEKSPSCPAG EYEYVDVIMK
201: GERLLIDIDF KSKFEIARAT KTYKSMLQTL PYIFVGKADR LQKIIVLICK AAKQSLKKKG LHVPPWRRAE YVKSKWLSSH VRVDQNSNGE VKQESVEVIA
301: ESVSSIVFGV

Arabidopsis Description

Protein of unknown function (DUF506) [Source:TAIR;Acc:AT2G38820]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.