Factsheet for PGSC0003DMT400041951

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400058821

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22970.1	PGSC0003DMT400058821	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g053910.2.1	Tomato	cytosol, plastid	94.59	89.97
PGSC0003DMT400015576	Potato	cytosol, plastid	71.35	66.67
VIT_05s0020g04500.t01	Wine grape	nucleus	62.97	60.36
KRH34359	Soybean	plastid	61.89	59.17
KRG92439	Soybean	plastid	59.46	55.98
Bra001897.1-P	Field mustard	cytosol	48.92	54.35
AT3G22970.1	Thale cress	plastid	54.32	54.32
AT4G14620.1	Thale cress	cytosol	50.0	54.25
Bra036877.1-P	Field mustard	cytosol, plastid	51.89	54.24
CDX92970	Canola	cytosol	48.65	54.05
CDY29750	Canola	nucleus, plastid	51.62	53.95
CDY16266	Canola	nucleus	51.89	53.78
CDX94877	Canola	cytosol	49.73	53.03
Bra033896.1-P	Field mustard	cytosol	52.16	52.59
CDY10330	Canola	cytosol	51.62	52.19
KRH69065	Soybean	cytosol	51.08	51.64
GSMUA_Achr3P15230_001	Banana	cytosol	46.76	51.34
KRH31637	Soybean	cytosol	52.7	50.91
GSMUA_Achr8P26930_001	Banana	cytosol	47.84	50.14
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	48.11	49.58
GSMUA_Achr8P20590_001	Banana	plastid	47.57	48.48
GSMUA_Achr4P14880_001	Banana	mitochondrion	34.59	48.48
CDY10329	Canola	plastid	49.19	48.15
GSMUA_Achr8P04470_001	Banana	cytosol	45.95	46.2
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	45.95	44.5
EER91615	Sorghum	mitochondrion	34.05	43.0
Zm00001d032955_P001	Maize	cytosol, mitochondrion, nucleus, plastid	34.59	42.67
PGSC0003DMT400049773	Potato	nucleus	48.92	41.71
TraesCS5A01G439200.1	Wheat	plastid	41.89	41.33
TraesCS5B01G442200.1	Wheat	plastid	41.89	41.33
TraesCS4B01G278500.1	Wheat	peroxisome, plastid	34.59	41.16
TraesCS4D01G277000.1	Wheat	peroxisome, plastid	34.59	41.16
EER95459	Sorghum	plastid	32.97	40.8
PGSC0003DMT400079089	Potato	cytosol	16.76	40.79
GSMUA_Achr9P25590_001	Banana	plastid	44.86	40.79
HORVU4Hr1G073730.1	Barley	peroxisome, plastid	34.59	40.63
TraesCS5D01G446400.1	Wheat	plastid	41.62	40.42
Os03t0162500-01	Rice	plastid	33.51	40.39
TraesCS4A01G025500.1	Wheat	peroxisome, plastid	34.32	40.32
Os10t0417800-01	Rice	plastid	32.7	40.2
Zm00001d027763_P001	Maize	plastid	32.43	40.0
Os03t0796600-01	Rice	cytosol, nucleus, plastid	41.89	38.27
EER93295	Sorghum	plastid	40.27	37.91
HORVU5Hr1G105950.2	Barley	plastid	41.62	37.84
Zm00001d018962_P001	Maize	mitochondrion, plastid	38.38	37.08
Zm00001d034444_P002	Maize	plastid	40.54	37.04
Zm00001d007820_P002	Maize	plastid	38.38	35.41
EER98072	Sorghum	cytosol, plastid	39.73	31.01
PGSC0003DMT400008686	Potato	cytosol	21.08	28.47
PGSC0003DMT400053173	Potato	nucleus	22.7	28.09
PGSC0003DMT400051812	Potato	nucleus	22.43	27.95
PGSC0003DMT400033381	Potato	cytosol, mitochondrion, nucleus	20.81	25.16
PGSC0003DMT400076442	Potato	nucleus	19.73	24.17
PGSC0003DMT400047228	Potato	nucleus	17.57	22.89
PGSC0003DMT400025041	Potato	cytosol	19.19	22.76
PGSC0003DMT400045914	Potato	cytosol, extracellular, nucleus	14.86	19.64

Protein Annotations

EnsemblPlants:PGSC0003DMT400041951	EnsemblPlantsGene:PGSC0003DMG400016273	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF19	PFAM:PF04720
PGSC:PGSC0003DMG400016273	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI000295A203	UniProt:M1BC92	MapMan:35.2

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400016273]

Coordinates

chr6:-:40142287..40144477

Molecular Weight (calculated)

41023.3 Da

IEP (calculated)

4.958

GRAVY (calculated)

-0.510

Length

370 amino acids

Sequence
(BLAST)

001: MPFPMKVQPI DSSTYRESIK NDAVKPLLKS RLKRFFDRPF PSVLRISSAA EKPGAAGAAN DGPGAEFEPN SVSLDKLVQN FIEENNDKSS AARFGRKCNC
101: FNGNNDSSDD EFDFDSVTNS SSFGDSSDTL KSLIPCASVT ERNLLAEASK IFEENKSCKR KDDLRKIVTD ELLALGYKAS ICKSKWEKAS STPAGEYEYI
201: DVIEDGERVI LDVDFRSEFE VARSTGRYKS ILQLLPFIFV GKADRLLQIV SIVSEAARQS LKKKGMHIAP WRNPEYMKAK WLSPYTSLAP AVESNAAAEI
301: TESESEYGEL DLIFSDKTLP LDSDPTTDPS ENTSGEEEKP VMMTWQPPAV KPKKTKVVVT GLASLLREKP

Best Arabidopsis Sequence Match ( AT3G22970.1 )
(BLAST)

001: MPFTMKIQPI DIDSSPTVAR AESGNKPVLK SRLKRLFDRP FTNVLRNSTT TTTEKPFVVT GGEVQCGGVV TEFEPSSVCL AKMVQNFIEE NNEKQAKCGR
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP

Arabidopsis Description

At3g22970 [Source:UniProtKB/TrEMBL;Acc:Q9LIJ8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.