Factsheet for PGSC0003DMT400058821

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015576
PGSC0003DMT400018308
PGSC0003DMT400033475
PGSC0003DMT400041951
PGSC0003DMT400057433
PGSC0003DMT400058821
PGSC0003DMT400076966

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15560.1	PGSC0003DMT400018308	AT1G08290.1	24104567
AT4G15560.1	PGSC0003DMT400076966	AT2G26080.1	24104567
AT4G15560.1	PGSC0003DMT400015576	AT3G22970.1	24104567
AT4G15560.1	PGSC0003DMT400041951	AT3G22970.1	24104567
AT4G15560.1	PGSC0003DMT400058821	AT4G15560.1	21798944
AT4G15560.1	PGSC0003DMT400033475	AT4G26780.1	24104567
AT4G15560.1	PGSC0003DMT400057433	AT4G26780.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g067890.2.1	Tomato	plastid	99.17	99.17
GSMUA_Achr10P...	Banana	cytosol	79.0	89.45
VIT_05s0020g02130.t01	Wine grape	plastid	85.95	86.31
Bra001832.1-P	Field mustard	peroxisome	73.85	85.92
KRH02173	Soybean	plastid	84.98	85.81
KRH20991	Soybean	plastid	85.95	85.71
KRH50940	Soybean	plastid	85.4	83.77
CDY64791	Canola	plastid	82.34	82.68
Bra033495.1-P	Field mustard	plastid	81.22	82.49
Os05t0408900-03	Rice	plastid	82.48	82.36
AT4G15560.1	Thale cress	plastid	81.92	82.15
EES19518	Sorghum	mitochondrion, plastid	82.34	81.99
KRH11287	Soybean	peroxisome, plastid	49.24	81.94
CDX90583	Canola	plastid	77.89	81.87
CDY09752	Canola	plastid	81.64	81.75
TraesCS1D01G255100.1	Wheat	plastid	80.95	81.74
Bra012779.1-P	Field mustard	plastid	77.75	81.73
TraesCS1B01G266500.1	Wheat	plastid	80.81	81.6
TraesCS1A01G255800.1	Wheat	plastid	80.81	81.6
GSMUA_Achr3P24940_001	Banana	plastid	83.31	80.08
CDY48893	Canola	plastid	79.69	80.03
CDY32433	Canola	plastid	79.55	79.89
HORVU1Hr1G060610.9	Barley	mitochondrion, plastid	80.25	79.48
Zm00001d038170_P001	Maize	plastid	82.61	79.41
CDY52177	Canola	plastid	79.42	77.9
AT3G21500.3	Thale cress	plastid	73.02	77.55
PGSC0003DMT400041591	Potato	plastid	69.26	69.17
PGSC0003DMT400074817	Potato	cytosol, peroxisome, plastid	17.39	65.79
KRH16140	Soybean	mitochondrion, plastid	11.13	61.07

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:9.1.2.2	ProteinID:ADK73609
ProteinID:ADK73609.1	InterPro:Dxylulose-5-P_synthase	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0008661	GO:GO:0009058	GO:GO:0009987	GO:GO:0016114	GO:GO:0016740
EMBL:GU936657	InterPro:IPR009014	UniProt:M1C3D4	HAMAP:MF_00315	PFAM:PF02779	PFAM:PF02780
PFAM:PF13292	EnsemblPlantsGene:PGSC0003DMG400022855	PGSC:PGSC0003DMG400022855	EnsemblPlants:PGSC0003DMT400058821	ScanProsite:PS00801	ScanProsite:PS00802
PANTHER:PTHR43322	PANTHER:PTHR43322:SF4	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding
TIGRFAMs:TIGR00204	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS	InterPro:Transketolase_C	InterPro:Transketolase_N
UniParc:UPI000295688B	:	:	:	:	:

Description

1-D-deoxyxylulose 5-phosphate synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400022855]

Coordinates

chr1:-:59973728..59978058

Molecular Weight (calculated)

77640.2 Da

IEP (calculated)

6.793

GRAVY (calculated)

-0.063

Length

719 amino acids

Sequence
(BLAST)

001: MALCAYAFPG ILNRTAVVSD SSKTAPLFSE WIHGTDLQFL FQHKLTHEVK KRSRVVQASL SESGEYYTQR PPTPILDTVN YPIHMKNLSL KELKQLADEL
101: RSDTIFNVSK TGGHLGSSLG VVELTVALHY VFNAPQDRIL WDVGHQSYPH KILTGRRDKM STLRQTDGLA GFTKRSESEY DCFGTGHSST TISAGLGMAV
201: GRDLKGRNNN VIAVIGDGAM TAGQAYEAMN NAGYLDSDMI VILNDNRQVS LPTATLDGPV APVGALSSAL SRLQSNRPLR ELREVAKGVT KQIGGPMHEL
301: AAKVDEYARG MISGSGSTLF EELGLYYIGP VDGHNIDDLI AILKEVRSTK TTGPVLIHVV TEKGRGYPYA ERAADKYHGV AKFDPATGKQ FKASAKTQSY
401: TTYFAEALIA EAEADKDIVA IHAAMGGGTG MNLFHRRFPT RCFDVGIAEQ HAVTFAAGLA CEGIKPFCAI YSSFMQRAYD QVVHDVDLQK LPVRFAMDRA
501: GLVGADGPTH CGAFDVTYMA CLPNMVVMAP SDEAELFHMV ATAAAIDDRP SCFRYPRGNG IGVELPAGNK GIPLEVGKGR ILIEGERVAL LGYGSAVQNC
601: LDAAIVLESR GLQVTVADAR FCKPLDHALI RSLAKSHGVL ITVEEGSIGG FGSHVVQFMA LDGLLDGKLK WRPIVLPDRY IDHGSPVDQL SEAGLTPSHI
701: AATVFNILGQ TREALEVMT

Best Arabidopsis Sequence Match ( AT4G15560.1 )
(BLAST)

001: MASSAFAFPS YIITKGGLST DSCKSTSLSS SRSLVTDLPS PCLKPNNNSH SNRRAKVCAS LAEKGEYYSN RPPTPLLDTI NYPIHMKNLS VKELKQLSDE
101: LRSDVIFNVS KTGGHLGSSL GVVELTVALH YIFNTPQDKI LWDVGHQSYP HKILTGRRGK MPTMRQTNGL SGFTKRGESE HDCFGTGHSS TTISAGLGMA
201: VGRDLKGKNN NVVAVIGDGA MTAGQAYEAM NNAGYLDSDM IVILNDNKQV SLPTATLDGP SPPVGALSSA LSRLQSNPAL RELREVAKGM TKQIGGPMHQ
301: LAAKVDEYAR GMISGTGSSL FEELGLYYIG PVDGHNIDDL VAILKEVKST RTTGPVLIHV VTEKGRGYPY AERADDKYHG VVKFDPATGR QFKTTNKTQS
401: YTTYFAEALV AEAEVDKDVV AIHAAMGGGT GLNLFQRRFP TRCFDVGIAE QHAVTFAAGL ACEGLKPFCA IYSSFMQRAY DQVVHDVDLQ KLPVRFAMDR
501: AGLVGADGPT HCGAFDVTFM ACLPNMIVMA PSDEADLFNM VATAVAIDDR PSCFRYPRGN GIGVALPPGN KGVPIEIGKG RILKEGERVA LLGYGSAVQS
601: CLGAAVMLEE RGLNVTVADA RFCKPLDRAL IRSLAKSHEV LITVEEGSIG GFGSHVVQFL ALDGLLDGKL KWRPMVLPDR YIDHGAPADQ LAEAGLMPSH
701: IAATALNLIG APREALF

Arabidopsis Description

DXSDXS1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.