Factsheet for PGSC0003DMT400074817

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
plastid 3
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0142900-02	Rice	peroxisome, plastid	64.21	54.71
Solyc08g066950.2.1	Tomato	plastid	100.0	26.8
VIT_04s0008g04970.t01	Wine grape	plastid	77.37	20.45
AT5G11380.1	Thale cress	plastid	75.26	20.43
Bra008967.1-P	Field mustard	plastid	74.74	20.4
CDX69763	Canola	plastid	74.74	20.4
KRH52494	Soybean	plastid	76.84	20.39
KRH61817	Soybean	plastid	76.32	20.11
PGSC0003DMT400058821	Potato	plastid	65.79	17.39
EER89177	Sorghum	peroxisome	65.79	17.31
Zm00001d045383_P006	Maize	peroxisome	65.79	16.64
PGSC0003DMT400041591	Potato	plastid	60.0	15.83
GSMUA_Achr4P17610_001	Banana	extracellular, nucleus	0.0	0.0

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:9.1.2.2	InterPro:Dxylulose-5-P_synthase
GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008661
GO:GO:0009058	GO:GO:0009987	GO:GO:0016114	GO:GO:0016740	InterPro:IPR009014	UniProt:M1CU79
PFAM:PF02780	EnsemblPlantsGene:PGSC0003DMG400029091	PGSC:PGSC0003DMG400029091	EnsemblPlants:PGSC0003DMT400074817	PANTHER:PTHR43322	PANTHER:PTHR43322:SF3
SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase_C	UniParc:UPI000294B7A3

Description

1-deoxyxylulose-5-phosphate synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400029091]

Coordinates

chr8:+:39917377..39919310

Molecular Weight (calculated)

20503.0 Da

IEP (calculated)

6.344

GRAVY (calculated)

0.198

Length

190 amino acids

Sequence
(BLAST)

001: MAPSDEVELS HMVATAALID DRPVCFRYPR GALSVMEHSF SGIPIEVGRG RILTEGKDVA LLGYGSMVQN CLRAQSLLSK LGVEVTVADA RFCKPLDIQL
101: LRQLCKNHSF LVTVEEGSIG GFASHVAQFL SLDGQLDAGI KWRPITLPDN YIEQASPKEQ LAVAGLTGNH IAATALSLLG RTREALLLMC

Best Arabidopsis Sequence Match ( AT5G11380.1 )
(BLAST)

001: MGSASIGYQF GISARFYGNF NLSSDITVSS LPCKLDVSIK SLFSAPSSTH KEYSNRARVC SLPNTDGYCD EKFETPILDS IETPLQLKNL SVKELKLLAD
101: EIRTELHSVL WKKTQKSMNP SFAAIELTLA LHYVFRAPVD NILWDAVEQT YAHKVLTRRW SAIPSRQNSG ISGVTSRLES EYDSFGTGHG CNSISAGLGL
201: AVARDMKGKR DRVVAVIDNV TITAGQAYEA MSNAGYLDSN MIVILNDSRH SLHPNMEEGS KASISALSSI MSKIQSSKVF RKFRELAKAM TKRIGKGMYE
301: WAAKVDEYAR GMVGPTGSTL FEELGLYYIG PVDGHNIEDL VCVLREVSSL DSMGPVLVHV ITEGNRDAET VKNIMVKDRR TYSDCFVEAL VMEAEKDRDI
401: VVVHAGMEMD PSLLTFQERF PDRFFNVGMA EQHAVTFSAG LSSGGLKPFC IIPSAFLQRA YDQVVHDVDR QRKAVRFVIT SAGLVGSDGP VQCGAFDIAF
501: MSSLPNMIAM APADEDELVN MVATAAYVTD RPVCFRFPRG SIVNMNYLVP TGLPIEIGRG RVLVEGQDVA LLGYGAMVQN CLHAHSLLSK LGLNVTVADA
601: RFCKPLDIKL VRDLCQNHKF LITVEEGCVG GFGSHVAQFI ALDGQLDGNI KWRPIVLPDG YIEEASPREQ LALAGLTGHH IAATALSLLG RTREALLLMS

Arabidopsis Description

DXPS31-D-deoxyxylulose 5-phosphate synthase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LFL9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.