Factsheet for VIT_04s0008g04970.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074817	Potato	cytosol, peroxisome, plastid	20.45	77.37
Os06t0142900-02	Rice	peroxisome, plastid	22.11	71.3
Solyc08g066950.2.1	Tomato	plastid	68.71	69.68
KRH52494	Soybean	plastid	69.12	69.41
KRH61817	Soybean	plastid	69.26	69.07
AT5G11380.1	Thale cress	plastid	64.53	66.29
CDX69763	Canola	plastid	63.0	65.09
Bra008967.1-P	Field mustard	plastid	62.87	64.94
EER89177	Sorghum	peroxisome	64.12	63.85
Zm00001d045383_P006	Maize	peroxisome	64.26	61.52
VIT_05s0020g02130.t01	Wine grape	plastid	56.05	56.28
VIT_11s0052g01780.t01	Wine grape	cytosol	51.6	53.77
VIT_00s0218g00110.t01	Wine grape	plastid	51.74	51.81
VIT_11s0052g01730.t01	Wine grape	plastid	52.85	51.7
VIT_11s0052g01240.t01	Wine grape	plastid	50.21	49.38
VIT_09s0002g02050.t01	Wine grape	cytosol	7.65	45.83
VIT_02s0012g00960.t01	Wine grape	cytosol	10.99	20.68
GSMUA_Achr4P17610_001	Banana	extracellular, nucleus	0.0	0.0

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	EntrezGene:100252520	wikigene:100252520	Gene3D:3.40.50.920	Gene3D:3.40.50.970
MapMan:9.1.2.2	EMBL:AM431698	ProteinID:CAN78159	ProteinID:CAN78159.1	ProteinID:CBI20995	ProteinID:CBI20995.3
UniProt:D7SUP6	InterPro:Dxylulose-5-P_synthase	EMBL:FN595231	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0008661	GO:GO:0009058	GO:GO:0009987	GO:GO:0016114
GO:GO:0016740	InterPro:IPR009014	EntrezGene:LOC100252520	wikigene:LOC100252520	HAMAP:MF_00315	PFAM:PF02779
PFAM:PF02780	PFAM:PF13292	PANTHER:PTHR43322	PANTHER:PTHR43322:SF3	SMART:SM00861	SUPFAM:SSF52518
SUPFAM:SSF52922	TIGR:TC57448	TIGR:TC62013	InterPro:THDP-binding	TIGRFAMs:TIGR00204	InterPro:Transketo_C/PFOR_II
InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI0001BE19AF	ArrayExpress:VIT_04s0008g04970	EnsemblPlantsGene:VIT_04s0008g04970	EnsemblPlants:VIT_04s0008g04970.t01
RefSeq:XP_002282428	RefSeq:XP_002282428.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:4457279..4468969

Molecular Weight (calculated)

78933.9 Da

IEP (calculated)

6.984

GRAVY (calculated)

-0.018

Length

719 amino acids

Sequence
(BLAST)

001: MGTACAQYPF EVTAHFQEKC RVLHPKTKFS SFNFPPKLDS SRMNLYPCSS STTSSKRYVG QICSLPEFGD FFWDRIPTPM LDMVESPMCL KNLTPKELKQ
101: LADEIRVELF CIMSKMQKPF KASLAVVELT VAIHYIFHAP MDKILWDVGE VTYAHKILTG RRALMHTLRE RGGLSGFTSR SESEYDPFGA GHGCSSISAG
201: LGMAVARDLK GKRERIVTVI GNGTTMAGQV YEAMGNAGYL DTNMVVILND SRHSLHPKLE DGQATPINAL SSTLTKLQSS KSFRKFREAA KGVTKRIGKG
301: MHELAAKVDE YARGMVGPLG ATLFEELGLY YIGPVDGHNI EDLISVLQGV ASLDPTGPVL VHVITKEYQG VEASQKSMIS NGHLKGFYTS ELSPYPLPRM
401: YSDCFVEALV NEAEKDKDIV VVHAGMGMEP PLQLFQEKFP YKFFDVGMAE QHAVTFSAGL ACGGLKPFCI IPSTFLQRAY DQVVHDVDRQ RIPVRFAITS
501: AGLVGSDGPT RCGAFDITFM SCLPNMIVMA PSDENELMHM VATAAHVDDR PICFRYPRGA TAGMSNSIWN GIPIEIGKGK VLIEGKDVAL LGYGVMVQNC
601: LKAWSLLSEL GIRVTVADAR FCKPLDIQLV RELCENHAFL ITVEEGSVGG FGSHVAQFIA LDGKLDGRIK WRPIALPDNY IEQASPEEQL AIAGLTGHHI
701: AATVLSLLGR NREALLLMQ

Best Arabidopsis Sequence Match ( AT5G11380.1 )
(BLAST)

001: MGSASIGYQF GISARFYGNF NLSSDITVSS LPCKLDVSIK SLFSAPSSTH KEYSNRARVC SLPNTDGYCD EKFETPILDS IETPLQLKNL SVKELKLLAD
101: EIRTELHSVL WKKTQKSMNP SFAAIELTLA LHYVFRAPVD NILWDAVEQT YAHKVLTRRW SAIPSRQNSG ISGVTSRLES EYDSFGTGHG CNSISAGLGL
201: AVARDMKGKR DRVVAVIDNV TITAGQAYEA MSNAGYLDSN MIVILNDSRH SLHPNMEEGS KASISALSSI MSKIQSSKVF RKFRELAKAM TKRIGKGMYE
301: WAAKVDEYAR GMVGPTGSTL FEELGLYYIG PVDGHNIEDL VCVLREVSSL DSMGPVLVHV ITEGNRDAET VKNIMVKDRR TYSDCFVEAL VMEAEKDRDI
401: VVVHAGMEMD PSLLTFQERF PDRFFNVGMA EQHAVTFSAG LSSGGLKPFC IIPSAFLQRA YDQVVHDVDR QRKAVRFVIT SAGLVGSDGP VQCGAFDIAF
501: MSSLPNMIAM APADEDELVN MVATAAYVTD RPVCFRFPRG SIVNMNYLVP TGLPIEIGRG RVLVEGQDVA LLGYGAMVQN CLHAHSLLSK LGLNVTVADA
601: RFCKPLDIKL VRDLCQNHKF LITVEEGCVG GFGSHVAQFI ALDGQLDGNI KWRPIVLPDG YIEEASPREQ LALAGLTGHH IAATALSLLG RTREALLLMS

Arabidopsis Description

DXPS31-D-deoxyxylulose 5-phosphate synthase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LFL9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.