Factsheet for VIT_00s0218g00110.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
plastid 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P17600_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	46.52	81.86
KRH45527	Soybean	plastid	79.81	80.25
KRH45528	Soybean	plastid	79.81	80.25
GSMUA_Achr5P15060_001	Banana	plastid	76.74	79.74
Solyc11g010850.1.1	Tomato	plastid	78.97	79.41
KRG99484	Soybean	plastid	78.83	79.27
PGSC0003DMT400041591	Potato	plastid	79.11	78.89
KRH39479	Soybean	plastid	79.81	78.49
Os07t0190000-01	Rice	plasma membrane, plastid	77.86	78.4
GSMUA_Achr5P24730_001	Banana	plastid	77.16	78.36
TraesCS2D01G575800.1	Wheat	plastid	77.72	78.26
HORVU1Hr1G084900.9	Barley	plastid	77.02	77.67
TraesCS1A01G384300.1	Wheat	plastid	76.88	77.42
TraesCS1D01G392500.1	Wheat	plastid	76.74	77.28
TraesCS2A01G565400.1	Wheat	plastid	77.44	77.12
Zm00001d019060_P001	Maize	plastid	77.02	76.07
EER96005	Sorghum	plastid	76.88	75.62
VIT_11s0052g01780.t01	Wine grape	cytosol	71.73	74.64
TraesCS2B01G626400.2	Wheat	plastid	77.58	73.87
HORVU2Hr1G126150.4	Barley	plastid	76.74	72.5
VIT_11s0052g01240.t01	Wine grape	plastid	72.42	71.14
VIT_11s0052g01730.t01	Wine grape	plastid	72.56	70.88
TraesCS1B01G411100.1	Wheat	mitochondrion	76.88	70.86
OQU88632	Sorghum	endoplasmic reticulum, vacuole	63.09	69.91
VIT_05s0020g02130.t01	Wine grape	plastid	68.52	68.72
VIT_09s0002g02050.t01	Wine grape	cytosol	9.19	55.0
VIT_04s0008g04970.t01	Wine grape	plastid	51.81	51.74
VIT_02s0012g00960.t01	Wine grape	cytosol	14.48	27.23

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	EntrezGene:100268079	wikigene:100268079	Gene3D:3.40.50.920	Gene3D:3.40.50.970
MapMan:9.1.2.2	ProteinID:CBI40852	ProteinID:CBI40852.3	UniProt:D7UDN7	InterPro:Dxylulose-5-P_synthase	EMBL:FN596763
GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008661
GO:GO:0009058	GO:GO:0009987	GO:GO:0016114	GO:GO:0016740	InterPro:IPR009014	EntrezGene:LOC100268079
wikigene:LOC100268079	HAMAP:MF_00315	PFAM:PF02779	PFAM:PF02780	PFAM:PF13292	ScanProsite:PS00801
ScanProsite:PS00802	PANTHER:PTHR43322	PANTHER:PTHR43322:SF4	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922
InterPro:THDP-binding	TIGRFAMs:TIGR00204	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS	InterPro:Transketolase_C
InterPro:Transketolase_N	UniParc:UPI000198623C	ArrayExpress:VIT_00s0218g00110	EnsemblPlantsGene:VIT_00s0218g00110	EnsemblPlants:VIT_00s0218g00110.t01	unigene:Vvi.14492
RefSeq:XP_002266925	RefSeq:XP_002266925.1	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:14030379..14035523

Molecular Weight (calculated)

77184.1 Da

IEP (calculated)

7.928

GRAVY (calculated)

-0.106

Length

718 amino acids

Sequence
(BLAST)

001: MAVSACVVRT NPSISPCLKA PRPSLSGRKQ SCLRACAANT SDGEEGNKMT RKEKDGGWKI EFTGEKPPTP LLDTINYPVH MKNLSTQDLE QLAAELRADI
101: VQSVSKTGGH LSSSLGVVEL TVALHHVFNT PEDKIIWDVG HQAYPHKILT GRRSRMHTIR KTSGLAGFPK REESVHDAFG VGHSSTSISA GLGMAVGRDL
201: LGKTNSVVAV IGDGAMTAGQ AYEAMNNAGY LDTNMIIILN DNKQVSLPTA TLDGPAIPVG ALSRTLTKLQ SSTKFRKLRE AAKSITKQLG GQTFEVAAKV
301: DEYARGLLSA SGSTLFEELG LYYIGPVDGH NVDDLVGIFQ KVKAMPAPGP VLIHIVTEKG KGYPPAEAAA DRMHGVVKFD PKSGQQFKSK SPTLPYTRYF
401: AESLIGEAKV DDKIVAIHAA MGGGTGLNYF QKRFPDRCFD VGIAEQHAVT FAAGLATEGL KPFCAIYSSF LQRGYDQVIH DVDLQKLPVR FAMDRAGLVG
501: ADGPTHCGAF DITYMACLPN MVVMAPSDEA ELMHMVATAA AIDDRPSCFR FPRGNGIGAV LPPDNKGTPL EIGKGRILAE GHRVALLGYG SIVQQCVEAA
601: SILRSQNIFV TVVDARFCKP LDGDLIRRLA KEHEILITVE EGSIGGFGSH VSHFLCLNGI MDGPLKLRAM VLPDRYIDHG SPEDQIQEAG LSSKHISATV
701: LSLLGRQKEA LTLNRMHI

Best Arabidopsis Sequence Match ( AT4G15560.1 )
(BLAST)

001: MASSAFAFPS YIITKGGLST DSCKSTSLSS SRSLVTDLPS PCLKPNNNSH SNRRAKVCAS LAEKGEYYSN RPPTPLLDTI NYPIHMKNLS VKELKQLSDE
101: LRSDVIFNVS KTGGHLGSSL GVVELTVALH YIFNTPQDKI LWDVGHQSYP HKILTGRRGK MPTMRQTNGL SGFTKRGESE HDCFGTGHSS TTISAGLGMA
201: VGRDLKGKNN NVVAVIGDGA MTAGQAYEAM NNAGYLDSDM IVILNDNKQV SLPTATLDGP SPPVGALSSA LSRLQSNPAL RELREVAKGM TKQIGGPMHQ
301: LAAKVDEYAR GMISGTGSSL FEELGLYYIG PVDGHNIDDL VAILKEVKST RTTGPVLIHV VTEKGRGYPY AERADDKYHG VVKFDPATGR QFKTTNKTQS
401: YTTYFAEALV AEAEVDKDVV AIHAAMGGGT GLNLFQRRFP TRCFDVGIAE QHAVTFAAGL ACEGLKPFCA IYSSFMQRAY DQVVHDVDLQ KLPVRFAMDR
501: AGLVGADGPT HCGAFDVTFM ACLPNMIVMA PSDEADLFNM VATAVAIDDR PSCFRYPRGN GIGVALPPGN KGVPIEIGKG RILKEGERVA LLGYGSAVQS
601: CLGAAVMLEE RGLNVTVADA RFCKPLDRAL IRSLAKSHEV LITVEEGSIG GFGSHVVQFL ALDGLLDGKL KWRPMVLPDR YIDHGAPADQ LAEAGLMPSH
701: IAATALNLIG APREALF

Arabidopsis Description

DXSDXS1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.