Factsheet for Os07t0190000-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plasma membrane: 15069638

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G084900.9	Barley	plastid	88.36	88.48
TraesCS1D01G392500.1	Wheat	plastid	87.94	87.94
TraesCS2D01G575800.1	Wheat	plastid	87.66	87.66
TraesCS1A01G384300.1	Wheat	plastid	87.66	87.66
Zm00001d019060_P001	Maize	plastid	88.22	86.52
EER96005	Sorghum	plastid	88.22	86.16
TraesCS2A01G565400.1	Wheat	plastid	86.68	85.71
TraesCS2B01G626400.2	Wheat	plastid	86.96	82.23
HORVU2Hr1G126150.4	Barley	plastid	86.4	81.05
GSMUA_Achr5P15060_001	Banana	plastid	78.4	80.9
GSMUA_Achr4P17600_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	45.72	79.9
KRH45528	Soybean	plastid	79.24	79.13
KRH45527	Soybean	plastid	78.96	78.85
TraesCS1B01G411100.1	Wheat	mitochondrion	85.69	78.43
GSMUA_Achr5P24730_001	Banana	plastid	77.42	78.08
VIT_00s0218g00110.t01	Wine grape	plastid	78.4	77.86
KRG99484	Soybean	plastid	77.84	77.73
OQU88632	Sorghum	endoplasmic reticulum, vacuole	70.27	77.31
Solyc11g010850.1.1	Tomato	plastid	77.28	77.17
PGSC0003DMT400041591	Potato	plastid	77.7	76.94
KRH39479	Soybean	plastid	77.0	75.21
Os05t0408900-03	Rice	plastid	71.95	71.25
Os06t0142900-02	Rice	peroxisome, plastid	17.39	55.61

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	Gene3D:3.40.50.970	EntrezGene:4342614	MapMan:9.1.2.2
EMBL:AK100909	ProteinID:BAC84616.1	ProteinID:BAD31023.1	ProteinID:BAF21000.1	ProteinID:BAT00410.1	InterPro:Dxylulose-5-P_synthase
ProteinID:EEE66718.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008299
GO:GO:0008661	GO:GO:0009058	GO:GO:0009228	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016114	GO:GO:0016740	GO:GO:0046872	GO:GO:0052865	InterPro:IPR009014	HAMAP:MF_00315
EnsemblPlantsGene:Os07g0190000	EnsemblPlants:Os07t0190000-01	PFAM:PF02779	PFAM:PF02780	PFAM:PF13292	ScanProsite:PS00801
ScanProsite:PS00802	PANTHER:PTHR43322	PANTHER:PTHR43322:SF4	UniProt:Q6YU51	SMART:SM00861	SUPFAM:SSF52518
SUPFAM:SSF52922	InterPro:THDP-binding	TIGRFAMs:TIGR00204	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS
InterPro:Transketolase_C	InterPro:Transketolase_N	UniParc:UPI00001BF75E	RefSeq:XP_015647944.1	SEG:seg	:

Description

1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 3Similar to 1-deoxy-D-xylulose 5-phosphate synthase 2 precursor. (Os07t0190000-01)

Coordinates

chr7:+:4821207..4824665

Molecular Weight (calculated)

75813.2 Da

IEP (calculated)

7.449

GRAVY (calculated)

-0.049

Length

713 amino acids

Sequence
(BLAST)

001: MALQASSSPS MFRAIPTNTN ASCRRKLQVR ASAAAAAANG GGDGKVMMRK EAASGAWKID YSGEKPATPL LDTVNYPVHM KNLSTPELEQ LAAELRAEIV
101: HTVSKTGGHL SSSLGVVELA VALHHVFDTP EDKIIWDVGH QAYPHKILTG RRSRMHTIRQ TSGLAGFPKR DESAHDAFGA GHSSTSISAA LGMAVARDLL
201: GKKNHVISVI GDGAMTAGQA YEAMNNSGYL DSNMIVVLND NKQVSLPTAT LDGPATPVGA LSKALTKLQS STKLRRLREA AKTVTKQIGG QAHEVAAKVD
301: EYARGMVSAS GSTLFEELGL YYIGPVDGHS VDDLVAIFNK VKSMPAPGPV LVHIVTEKGK GYPPAEAAAD RMHGVVKFDP TTGRQFKSKC STLSYTQYFA
401: EALIREAEAD DKVVGIHAAM GGGTGLNYFH KRFPERCFDV GIAEQHAVTF AAGLAAEGLK PFCAIYSSFL QRGYDQVVHD VDLQRLPVRF AMDRAGLVGA
501: DGPTHCGAFD VAYMACLPNM VVMAPADEAE LMHMVATAAA IDDRPSCFRF PRGNGIGAVL PPNHKGTPLE VGKGRVLVGG NRVALLGYGT MVQACMKAAE
601: ALKEHGIYVT VADARFCKPL DTGLIRELAA EHEVLVTVEE GSIGGFGSHV AHYLSLSGLL DGPLKLRSMF LPDRYIDHGA PVDQLEEAGL TPRHIAATVL
701: SLLGRPLEAL QLS

Best Arabidopsis Sequence Match ( AT4G15560.1 )
(BLAST)

001: MASSAFAFPS YIITKGGLST DSCKSTSLSS SRSLVTDLPS PCLKPNNNSH SNRRAKVCAS LAEKGEYYSN RPPTPLLDTI NYPIHMKNLS VKELKQLSDE
101: LRSDVIFNVS KTGGHLGSSL GVVELTVALH YIFNTPQDKI LWDVGHQSYP HKILTGRRGK MPTMRQTNGL SGFTKRGESE HDCFGTGHSS TTISAGLGMA
201: VGRDLKGKNN NVVAVIGDGA MTAGQAYEAM NNAGYLDSDM IVILNDNKQV SLPTATLDGP SPPVGALSSA LSRLQSNPAL RELREVAKGM TKQIGGPMHQ
301: LAAKVDEYAR GMISGTGSSL FEELGLYYIG PVDGHNIDDL VAILKEVKST RTTGPVLIHV VTEKGRGYPY AERADDKYHG VVKFDPATGR QFKTTNKTQS
401: YTTYFAEALV AEAEVDKDVV AIHAAMGGGT GLNLFQRRFP TRCFDVGIAE QHAVTFAAGL ACEGLKPFCA IYSSFMQRAY DQVVHDVDLQ KLPVRFAMDR
501: AGLVGADGPT HCGAFDVTFM ACLPNMIVMA PSDEADLFNM VATAVAIDDR PSCFRYPRGN GIGVALPPGN KGVPIEIGKG RILKEGERVA LLGYGSAVQS
601: CLGAAVMLEE RGLNVTVADA RFCKPLDRAL IRSLAKSHEV LITVEEGSIG GFGSHVVQFL ALDGLLDGKL KWRPMVLPDR YIDHGAPADQ LAEAGLMPSH
701: IAATALNLIG APREALF

Arabidopsis Description

DXSDXS1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.