Factsheet for GSMUA_Achr5P24730_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P17600_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	50.35	87.25
GSMUA_Achr5P15060_001	Banana	plastid	81.61	83.5
TraesCS1A01G384300.1	Wheat	plastid	79.77	79.1
HORVU1Hr1G084900.9	Barley	plastid	79.07	78.51
TraesCS1D01G392500.1	Wheat	plastid	79.07	78.4
TraesCS2D01G575800.1	Wheat	plastid	78.92	78.26
Zm00001d019060_P001	Maize	plastid	80.34	78.13
TraesCS2A01G565400.1	Wheat	plastid	79.35	77.81
Solyc11g010850.1.1	Tomato	plastid	78.36	77.59
Os07t0190000-01	Rice	plasma membrane, plastid	78.08	77.42
PGSC0003DMT400041591	Potato	plastid	78.64	77.22
VIT_00s0218g00110.t01	Wine grape	plastid	78.36	77.16
KRH45527	Soybean	plastid	77.65	76.89
EER96005	Sorghum	plastid	79.21	76.71
KRG99484	Soybean	plastid	77.37	76.61
KRH45528	Soybean	plastid	76.94	76.19
KRH39479	Soybean	plastid	76.94	74.52
TraesCS2B01G626400.2	Wheat	plastid	78.78	73.87
HORVU2Hr1G126150.4	Barley	plastid	78.78	73.29
GSMUA_Achr10P...	Banana	cytosol	65.63	73.07
TraesCS1B01G411100.1	Wheat	mitochondrion	79.21	71.89
OQU88632	Sorghum	endoplasmic reticulum, vacuole	64.92	70.83
GSMUA_Achr3P24940_001	Banana	plastid	68.18	64.44
GSMUA_Achr5P06150_001	Banana	plastid	52.76	52.54
GSMUA_Achr4P17610_001	Banana	extracellular, nucleus	0.14	0.05

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:9.1.2.2	ncoils:Coil
InterPro:Dxylulose-5-P_synthase	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0008661	GO:GO:0009058	GO:GO:0009987	GO:GO:0016114	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr5G24730_001
EnsemblPlants:GSMUA_Achr5P24730_001	EnsemblPlants:GSMUA_Achr5T24730_001	InterPro:IPR009014	UniProt:M0T1E8	HAMAP:MF_00315	PFAM:PF02779
PFAM:PF02780	PFAM:PF13292	ScanProsite:PS00801	ScanProsite:PS00802	PANTHER:PTHR43322	PANTHER:PTHR43322:SF4
SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	TIGRFAMs:TIGR00204	InterPro:Transketo_C/PFOR_II
InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS	InterPro:Transketolase_C	InterPro:Transketolase_N	UniParc:UPI000296C7C7	:

Description

Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr5G24730_001]

Coordinates

chr5:-:26011963..26014971

Molecular Weight (calculated)

75746.3 Da

IEP (calculated)

8.235

GRAVY (calculated)

-0.061

Length

707 amino acids

Sequence
(BLAST)

001: MEASGSLMAA FSAPFLVAPN PRTSPKRQFR VRACGLGGDG KMMFNKGKSG WTIDFSGEKP PTPLLDTINY PIHMKNLSVQ DLEQLAAELR AEIVFTVSKT
101: GGHLSASLGV VELSVALHHV FDTPEDKIIW DVGHQAYTHK ILTGRRSRMH TVRQTSGIAG FPRRDESIYD AFGAGHSSTS ISAGLGMAVA RDMLGKKNHV
201: ISVIGDGAMT AGQAYEAMNN SGYLNSNLIV VLNDNRQVSL PTATLDGPAT PVGALSKALT RLQASTKFRK LREAAKSITK QIGGPTHEVA AKVDEFARGL
301: ISANGSSLFE ELGLYYIGPV DGHNLEDLVT IFQDVKSMPA PGPVLIHIVT EKGKGYPPAE AAPDKMHGVV KFDPSTGKQL KPKSPTRSYT QYFAEALIKE
401: AEADNKVVAI HAAMGGGTGL NYFQKRFPDR CFDVGIAEQH AVTFAAGLAT EGLKPFCAIY SSFLQRGYDQ VVHDVDLQKI PVRFALDRAG LVGADGPTHC
501: GAFDITYMAC LPNMIVMAPA DEAELMHMVA TAAAIDDRPS CFRFPRGNGV GVALPPDNKG SPLEIGKGRV LMEGDRAAIL GYGSTVNTCL KAADTLRAHA
601: VFATVADARF CKPLDVKLIR SLVKEHDILI TVEEGSIGGF GSHVAHFLSL SGLLDGQLKL RSMVLPDRYI DHGSPQDQIE AAGLSSRHVA ATVLSLLGRR
701: KEALLLK

Best Arabidopsis Sequence Match ( AT4G15560.1 )
(BLAST)

001: MASSAFAFPS YIITKGGLST DSCKSTSLSS SRSLVTDLPS PCLKPNNNSH SNRRAKVCAS LAEKGEYYSN RPPTPLLDTI NYPIHMKNLS VKELKQLSDE
101: LRSDVIFNVS KTGGHLGSSL GVVELTVALH YIFNTPQDKI LWDVGHQSYP HKILTGRRGK MPTMRQTNGL SGFTKRGESE HDCFGTGHSS TTISAGLGMA
201: VGRDLKGKNN NVVAVIGDGA MTAGQAYEAM NNAGYLDSDM IVILNDNKQV SLPTATLDGP SPPVGALSSA LSRLQSNPAL RELREVAKGM TKQIGGPMHQ
301: LAAKVDEYAR GMISGTGSSL FEELGLYYIG PVDGHNIDDL VAILKEVKST RTTGPVLIHV VTEKGRGYPY AERADDKYHG VVKFDPATGR QFKTTNKTQS
401: YTTYFAEALV AEAEVDKDVV AIHAAMGGGT GLNLFQRRFP TRCFDVGIAE QHAVTFAAGL ACEGLKPFCA IYSSFMQRAY DQVVHDVDLQ KLPVRFAMDR
501: AGLVGADGPT HCGAFDVTFM ACLPNMIVMA PSDEADLFNM VATAVAIDDR PSCFRYPRGN GIGVALPPGN KGVPIEIGKG RILKEGERVA LLGYGSAVQS
601: CLGAAVMLEE RGLNVTVADA RFCKPLDRAL IRSLAKSHEV LITVEEGSIG GFGSHVVQFL ALDGLLDGKL KWRPMVLPDR YIDHGAPADQ LAEAGLMPSH
701: IAATALNLIG APREALF

Arabidopsis Description

DXSDXS1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.