Factsheet for PGSC0003DMT400041591

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g010850.1.1	Tomato	plastid	94.86	95.66
GSMUA_Achr4P17600_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	45.97	81.13
KRH45527	Soybean	plastid	78.75	79.41
KRH45528	Soybean	plastid	78.61	79.27
VIT_00s0218g00110.t01	Wine grape	plastid	78.89	79.11
KRG99484	Soybean	plastid	78.19	78.85
GSMUA_Achr5P24730_001	Banana	plastid	77.22	78.64
GSMUA_Achr5P15060_001	Banana	plastid	75.0	78.15
TraesCS2D01G575800.1	Wheat	plastid	77.36	78.12
TraesCS1D01G392500.1	Wheat	plastid	77.22	77.98
Os07t0190000-01	Rice	plasma membrane, plastid	76.94	77.7
TraesCS1A01G384300.1	Wheat	plastid	76.94	77.7
HORVU1Hr1G084900.9	Barley	plastid	76.67	77.53
TraesCS2A01G565400.1	Wheat	plastid	77.36	77.25
KRH39479	Soybean	plastid	77.78	76.71
Zm00001d019060_P001	Maize	plastid	76.81	76.07
EER96005	Sorghum	plastid	76.39	75.34
TraesCS2B01G626400.2	Wheat	plastid	77.22	73.74
HORVU2Hr1G126150.4	Barley	plastid	76.25	72.24
TraesCS1B01G411100.1	Wheat	mitochondrion	76.53	70.73
OQU88632	Sorghum	endoplasmic reticulum, vacuole	63.19	70.22
PGSC0003DMT400058821	Potato	plastid	69.17	69.26
PGSC0003DMT400074817	Potato	cytosol, peroxisome, plastid	15.83	60.0

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	EntrezGene:102598525	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:9.1.2.2
InterPro:Dxylulose-5-P_synthase	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0008661	GO:GO:0009058	GO:GO:0009987	GO:GO:0016114	GO:GO:0016740	InterPro:IPR009014
UniProt:M1BBK8	HAMAP:MF_00315	PFAM:PF02779	PFAM:PF02780	PFAM:PF13292	EnsemblPlantsGene:PGSC0003DMG400016120
PGSC:PGSC0003DMG400016120	EnsemblPlants:PGSC0003DMT400041591	ScanProsite:PS00802	PANTHER:PTHR43322	PANTHER:PTHR43322:SF4	SMART:SM00861
SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	TIGRFAMs:TIGR00204	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd
InterPro:Transketolase_BS	InterPro:Transketolase_C	UniParc:UPI00029574A9	RefSeq:XP_006353153.1	:	:

Description

1-deoxy-D-xylulose 5-phosphate synthase 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400016120]

Coordinates

chr11:+:2114554..2119953

Molecular Weight (calculated)

77822.9 Da

IEP (calculated)

7.402

GRAVY (calculated)

-0.097

Length

720 amino acids

Sequence
(BLAST)

001: MAVSSGPVFR INQQPSSPYL TTPRFYNFTR KTFLVKASVN GSDEINGKMV RKEEKVGLQI DFSGEKPPTP FLDTVNYPKH MKNLSKMDLE QLAAEVRAEI
101: VYSVAKTGGH LSSSLGVVEL TVALHHVFDT PEDKIIWDVG HQAYAHKILT GRRSKMHTMR KTSGLAPFPK RDESAYDAFG AGHSSTSISA GLGMAVARDL
201: LGNNNHVISV IGDGAMTAGQ AYEAMNNAGF LDSNLIVILN DNKQVSLPTA TLDGPATPVG ALSSALSKIQ ASRKFRQLRE AAKSITKQIG PQTHEVAAKV
301: DEYARGMLSA SGSTLFEELG LYYIGPVDGH NIEDLITILK KVKAMPAPGP VLIHIVTEKG KGYLPAEAAD DKMHGVAQFD PKTGKQFKAK SPTLSYTQYF
401: AESLIKEAEN DKKIVAIHAA MGGGTGLNYF QKQFPERCFD VGIAEQHAVT FAAGLATEGL KPFCAIYSSF LQRGYDQVVH DVDLQKLPVR FAMDRAGLVG
501: ADGPTHCGAF DVTYMACLPN MVVMAPSDEA ELMHMVATAA AIDDRPSCFR FPRGNGIGAV LPLNNKGIPI EVGKGRILRE GERVAILGYG SIVQQCLGAA
601: DILNSHDVRV TVADARFCKP LDADLIKRLA KEHEILITVE EGSIGGFGSH VSHFLSLNSI LDGPLKLRSM LLPDRYIDHG SPVDQIEEAG LSSRHICATV
701: LTLLGRPQEA MVVNQISKML

Best Arabidopsis Sequence Match ( AT4G15560.1 )
(BLAST)

001: MASSAFAFPS YIITKGGLST DSCKSTSLSS SRSLVTDLPS PCLKPNNNSH SNRRAKVCAS LAEKGEYYSN RPPTPLLDTI NYPIHMKNLS VKELKQLSDE
101: LRSDVIFNVS KTGGHLGSSL GVVELTVALH YIFNTPQDKI LWDVGHQSYP HKILTGRRGK MPTMRQTNGL SGFTKRGESE HDCFGTGHSS TTISAGLGMA
201: VGRDLKGKNN NVVAVIGDGA MTAGQAYEAM NNAGYLDSDM IVILNDNKQV SLPTATLDGP SPPVGALSSA LSRLQSNPAL RELREVAKGM TKQIGGPMHQ
301: LAAKVDEYAR GMISGTGSSL FEELGLYYIG PVDGHNIDDL VAILKEVKST RTTGPVLIHV VTEKGRGYPY AERADDKYHG VVKFDPATGR QFKTTNKTQS
401: YTTYFAEALV AEAEVDKDVV AIHAAMGGGT GLNLFQRRFP TRCFDVGIAE QHAVTFAAGL ACEGLKPFCA IYSSFMQRAY DQVVHDVDLQ KLPVRFAMDR
501: AGLVGADGPT HCGAFDVTFM ACLPNMIVMA PSDEADLFNM VATAVAIDDR PSCFRYPRGN GIGVALPPGN KGVPIEIGKG RILKEGERVA LLGYGSAVQS
601: CLGAAVMLEE RGLNVTVADA RFCKPLDRAL IRSLAKSHEV LITVEEGSIG GFGSHVVQFL ALDGLLDGKL KWRPMVLPDR YIDHGAPADQ LAEAGLMPSH
701: IAATALNLIG APREALF

Arabidopsis Description

DXSDXS1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.