Factsheet for GSMUA_Achr4P17600_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

cytosol 2
plastid 3
peroxisome 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid, secretory
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P15060_001	Banana	plastid	86.76	51.23
OQU88632	Sorghum	endoplasmic reticulum, vacuole	80.15	50.46
GSMUA_Achr5P24730_001	Banana	plastid	87.25	50.35
GSMUA_Achr10P...	Banana	cytosol	74.51	47.87
Solyc11g010850.1.1	Tomato	plastid	81.62	46.64
VIT_00s0218g00110.t01	Wine grape	plastid	81.86	46.52
HORVU1Hr1G084900.9	Barley	plastid	81.13	46.49
TraesCS1A01G384300.1	Wheat	plastid	81.13	46.42
KRH45527	Soybean	plastid	81.13	46.36
TraesCS2D01G575800.1	Wheat	plastid	80.39	46.0
TraesCS1D01G392500.1	Wheat	plastid	80.39	46.0
PGSC0003DMT400041591	Potato	plastid	81.13	45.97
KRH45528	Soybean	plastid	80.39	45.94
KRG99484	Soybean	plastid	80.15	45.8
EER96005	Sorghum	plastid	81.86	45.75
Os07t0190000-01	Rice	plasma membrane, plastid	79.9	45.72
TraesCS2A01G565400.1	Wheat	plastid	80.39	45.49
Zm00001d019060_P001	Maize	plastid	80.88	45.39
KRH39479	Soybean	plastid	79.66	44.52
TraesCS2B01G626400.2	Wheat	plastid	80.39	43.5
HORVU2Hr1G126150.4	Barley	plastid	80.88	43.42
TraesCS1B01G411100.1	Wheat	mitochondrion	80.88	42.36
GSMUA_Achr3P24940_001	Banana	plastid	74.26	40.51
GSMUA_Achr5P06150_001	Banana	plastid	55.64	31.97
GSMUA_Achr4P17610_001	Banana	extracellular, nucleus	0.25	0.05

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:9.1.2.2	InterPro:Dxylulose-5-P_synthase
GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008661
GO:GO:0009058	GO:GO:0009987	GO:GO:0016114	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr4G17600_001	EnsemblPlants:GSMUA_Achr4P17600_001
EnsemblPlants:GSMUA_Achr4T17600_001	InterPro:IPR009014	UniProt:M0SPS3	PFAM:PF02779	PFAM:PF02780	PFAM:PF13292
ScanProsite:PS00802	PANTHER:PTHR43322	PANTHER:PTHR43322:SF4	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922
InterPro:THDP-binding	TIGRFAMs:TIGR00204	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS	InterPro:Transketolase_C
UniParc:UPI000296CE74	:	:	:	:	:

Description

Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr4G17600_001]

Coordinates

chr4:-:17581387..17583223

Molecular Weight (calculated)

43987.3 Da

IEP (calculated)

6.562

GRAVY (calculated)

0.079

Length

408 amino acids

Sequence
(BLAST)

001: MISTDGSLLF EELGLYYIGP VDGHNVEDLV TIFEKVKSLP APGPVLIHIV TEKGKGYPPA EAAADKMHGV VKFDPRTGKQ FKSTSSTLSY TQYFAESLIK
101: EAEADDKIVA IHAAMGSGTG LNLFQHKFPQ RCFDVGIAEQ HAVTFAAGLA TEGLKPFCAI YSSFLQRGYD QVVHDVDLQK IPVRFALDRA GLVGADGPTH
201: CGAFDITYMA CLPNMIVMAP ADEAELVHMV ATAAAIDDRP SCFRFPRGNG VGVMLPPGNK GTPFEIGKGR VLMEGNRVAI LGYGSIVQTC LKAADPLRAR
301: GVFATVADAR FCKPLDVGLI RRLVNEHEIL ITVEEGSIGG FASHVTHFLS LSGLLDGRMK LRPMVLPDRY IDHGSPQDQI EAAGLSSGHI VSTVLNLLGR
401: QKEALYLH

Best Arabidopsis Sequence Match ( AT3G21500.1 )
(BLAST)

001: MSYQTQINKF SQMALSVFAF PSYINRNPSL KYLKPSSMSS TKYSKVRATT FSEKGEYYSN RPPTPLLDTI NHPMHMKNLS IKELKVLSDE LRSDVIFNVS
101: KTGGHLGSNL GVVELTVALH YIFNTPHDKI LWDVGHQSYP HKILTGRRGK MKTIRQTNGL SGYTKRRESE HDSFGTGHSS TTLSAGLGMA VGRDLKGMNN
201: SVVSVIGDGA MTAGQAYEAM NNAGYLHSNM IVILNDNKQV SLPTANLDGP TQPVGALSCA LSRLQSNCGM IRETSSTLFE ELGFHYVGPV DGHNIDDLVS
301: ILETLKSTKT IGPVLIHVVT EKGRGYPYAE RADDKYHVLK FDPETGKQFK NISKTQSYTS CFVEALIAEA EADKDIVAIH AAMGGGTMLN LFESRFPTRC
401: FDVGIAEQHA VTFAAGLACE GLKPFCTIYS SFMQRAYDQV VHDVDLQKLP VRFAIDRAGL MGADGPTHCG AFDVTFMACL PNMIVMAPSD EAELFNMVAT
501: AAAIDDRPSC FRYHRGNGIG VSLPPGNKGV PLQIGRGRIL RDGERVALLG YGSAVQRCLE AASMLSERGL KITVADARFC KPLDVALIRS LAKSHEVLIT
601: VEEGSIGGFG SHVVQFLALD GLLDGKLKVY RTWITNGSTS

Arabidopsis Description

DXPS11-deoxy-D-xylulose 5-phosphate synthase 1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTC7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.