Factsheet for GSMUA_Achr5P15060_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 3
plastid 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	mitochondrion
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P17600_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	51.23	86.76
GSMUA_Achr5P24730_001	Banana	plastid	83.5	81.61
Os07t0190000-01	Rice	plasma membrane, plastid	80.9	78.4
HORVU1Hr1G084900.9	Barley	plastid	80.61	78.23
TraesCS1D01G392500.1	Wheat	plastid	80.61	78.12
TraesCS1A01G384300.1	Wheat	plastid	80.61	78.12
TraesCS2D01G575800.1	Wheat	plastid	79.74	77.28
KRH45527	Soybean	plastid	79.31	76.75
VIT_00s0218g00110.t01	Wine grape	plastid	79.74	76.74
TraesCS2A01G565400.1	Wheat	plastid	79.74	76.42
KRH45528	Soybean	plastid	78.73	76.19
KRG99484	Soybean	plastid	78.58	76.05
Zm00001d019060_P001	Maize	plastid	79.59	75.65
Solyc11g010850.1.1	Tomato	plastid	78.15	75.63
EER96005	Sorghum	plastid	79.74	75.48
PGSC0003DMT400041591	Potato	plastid	78.15	75.0
KRH39479	Soybean	plastid	77.71	73.56
GSMUA_Achr10P...	Banana	cytosol	67.0	72.91
TraesCS2B01G626400.2	Wheat	plastid	79.31	72.68
HORVU2Hr1G126150.4	Barley	plastid	79.88	72.63
TraesCS1B01G411100.1	Wheat	mitochondrion	80.9	71.76
OQU88632	Sorghum	endoplasmic reticulum, vacuole	65.7	70.06
GSMUA_Achr3P24940_001	Banana	plastid	68.74	63.5
GSMUA_Achr5P06150_001	Banana	plastid	52.39	50.99
GSMUA_Achr4P17610_001	Banana	extracellular, nucleus	0.14	0.05

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:9.1.2.2	InterPro:Dxylulose-5-P_synthase
GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008661
GO:GO:0009058	GO:GO:0009987	GO:GO:0016114	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr5G15060_001	EnsemblPlants:GSMUA_Achr5P15060_001
EnsemblPlants:GSMUA_Achr5T15060_001	InterPro:IPR009014	UniProt:M0SYN5	HAMAP:MF_00315	PFAM:PF02779	PFAM:PF02780
PFAM:PF13292	ScanProsite:PS00801	PANTHER:PTHR43322	PANTHER:PTHR43322:SF4	SMART:SM00861	SUPFAM:SSF52518
SUPFAM:SSF52922	InterPro:THDP-binding	TIGRFAMs:TIGR00204	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C
InterPro:Transketolase_N	UniParc:UPI0002958640	:	:	:	:

Description

Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr5G15060_001]

Coordinates

chr5:-:10970968..10974724

Molecular Weight (calculated)

74222.5 Da

IEP (calculated)

7.904

GRAVY (calculated)

-0.068

Length

691 amino acids

Sequence
(BLAST)

001: MVEARSLMVA SAAPFLKALS SSANGRRQLC VRAGGASGDG KVMITKEKSG WKIDYSGEKP ATPLLDSINY PIHMKNLSTR DLEQLSAELR AEIVFAVAKT
101: GGHLSSSLGV VELAVALHHV FDAPEDKIIW DVGHQAYPHK ILTGRRSRMN TIRQTAGLAG FPKRDESIYD AFGAGHSSTS ISAGLGMAVA RDLLGKKNHV
201: ISVIGDGAMT AGQAYEAMNN AGYLDSNLII VLNDNKQVSL PTATLDGPAT PVGALSKALT KLQSSTKLRK LREAAKNITK QIGGQTHDIA AKVDEYARGM
301: MSATGYSLFE ELGLYYIGPV DGHDVEDLVT IFEKVKSLPA PGPVLIHIVT EKGKGYPPAE SAADKMHGVV KFDPKTGKQF KSKSSTLSYT QYFAETLIKE
401: AQVDDKIVAV HAAMGSGTGL NYFQHKFPER CFDVGIAEQH AVTFAAGLAT EGLKPFCAIY SSFLQRGYDQ VVHDVDLQKI PVRFALDRAG LVGADGPTHC
501: GAFDIVYMAC LPNMIVMAPA DEAELMHMIA TAAAIDDRPS CFRFPRGNGV GVALPPNNKG TPLEIGKGRV LMEGNRVAIL GYGSIVQTCL KAADSLRSHG
601: IFPTVADARF CKPLDVELIR RLANEHEILI TVEEGSIGGF GSHLRSMVLP DRYIDHGSPQ DQFEVAGLSS RHIAATVLSL LGRRKEALHL H

Best Arabidopsis Sequence Match ( AT4G15560.1 )
(BLAST)

001: MASSAFAFPS YIITKGGLST DSCKSTSLSS SRSLVTDLPS PCLKPNNNSH SNRRAKVCAS LAEKGEYYSN RPPTPLLDTI NYPIHMKNLS VKELKQLSDE
101: LRSDVIFNVS KTGGHLGSSL GVVELTVALH YIFNTPQDKI LWDVGHQSYP HKILTGRRGK MPTMRQTNGL SGFTKRGESE HDCFGTGHSS TTISAGLGMA
201: VGRDLKGKNN NVVAVIGDGA MTAGQAYEAM NNAGYLDSDM IVILNDNKQV SLPTATLDGP SPPVGALSSA LSRLQSNPAL RELREVAKGM TKQIGGPMHQ
301: LAAKVDEYAR GMISGTGSSL FEELGLYYIG PVDGHNIDDL VAILKEVKST RTTGPVLIHV VTEKGRGYPY AERADDKYHG VVKFDPATGR QFKTTNKTQS
401: YTTYFAEALV AEAEVDKDVV AIHAAMGGGT GLNLFQRRFP TRCFDVGIAE QHAVTFAAGL ACEGLKPFCA IYSSFMQRAY DQVVHDVDLQ KLPVRFAMDR
501: AGLVGADGPT HCGAFDVTFM ACLPNMIVMA PSDEADLFNM VATAVAIDDR PSCFRYPRGN GIGVALPPGN KGVPIEIGKG RILKEGERVA LLGYGSAVQS
601: CLGAAVMLEE RGLNVTVADA RFCKPLDRAL IRSLAKSHEV LITVEEGSIG GFGSHVVQFL ALDGLLDGKL KWRPMVLPDR YIDHGAPADQ LAEAGLMPSH
701: IAATALNLIG APREALF

Arabidopsis Description

DXSDXS1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.